Ecor002899.2
Basic Information
- Insect
- Eupeodes corollae
- Gene Symbol
- -
- Assembly
- GCA_945859775.1
- Location
- CAMAOS010000031.1:1651442-1689685[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00087 0.11 13.8 0.1 2 23 483 504 482 504 0.97 2 17 0.4 51 5.4 5.0 1 23 510 533 510 533 0.89 3 17 0.00059 0.076 14.3 0.3 3 23 538 559 536 559 0.93 4 17 0.015 1.9 9.9 0.1 2 19 568 585 567 588 0.92 5 17 0.00028 0.036 15.3 1.7 1 23 596 618 596 618 0.97 6 17 0.00017 0.022 16.0 2.2 1 23 624 646 624 646 0.97 7 17 0.00048 0.062 14.6 2.6 1 23 652 674 652 674 0.95 8 17 7.5 9.8e+02 1.4 5.5 3 22 682 701 680 701 0.92 9 17 0.08 10 7.6 2.7 1 23 1007 1030 1007 1030 0.98 10 17 0.67 86 4.7 1.4 1 23 1054 1076 1054 1076 0.90 11 17 0.025 3.2 9.2 0.4 1 23 1084 1108 1084 1108 0.94 12 17 0.00017 0.022 16.0 0.7 1 23 1112 1134 1112 1134 0.98 13 17 0.00011 0.014 16.7 0.3 2 21 1146 1165 1145 1166 0.92 14 17 0.00034 0.044 15.1 0.4 1 23 1174 1196 1174 1196 0.94 15 17 2.6e-05 0.0034 18.6 1.8 1 23 1202 1225 1202 1225 0.97 16 17 6e-05 0.0077 17.4 0.2 1 23 1231 1253 1231 1253 0.98 17 17 0.0031 0.41 12.0 1.6 1 21 1259 1279 1259 1280 0.95
Sequence Information
- Coding Sequence
- ATGCTGCGTTTTAATTTTCCGGATGGGGTGCCTATAGTTGAGGTCTATACTGGATTGGATTGGTTCAGTGTTACACCTATCCTCGCCAGATCATCAGCTTTCTTCCCATTCTTTTCTCTAGCCGATCCGACTGGCCAGTTAAGTGGTTATAAGCTTATGTGGTTAGAAGCAACTAAATCGTCAGATAAAGGGCGAGCAAGTGGAGGCACTCTATATGGGATACGATCTTCGTTACTAAATACATTCATTTTTGACGAATGTGAAGGAACAACAATTGTAAAATGTGTGAAGGAGAAGAATATGTGTATCGTACCATGTTACATAAATTGCAATCACTGGAAAAATGATTTCGAAAAACTTTACAATACAATCCAAAGTCTAGATAGCAGCAGTATGAGTATACTCCTCATTGGAGACTGTAATGCAAGAACTGGAAAAAATCAAATAAAAATAGCAAAAAATATATCAAATCCTTCGATATCTACCAACGAAAGAAATTCAGCTGACAGTGTATGCAATAAAAACGGAGTGGAATTGCTCCAGTTGCTCCAAATTCATGGTTTAACAATTCTAAATGGTTGTACAATAGGAGATAAAGATGGCCACCTCACCTTCATCGGCGCACAGGGTAAATCTGTGATTGACCTTTGCGCTGTAAATGATAAATGGATTGATCGTGTCAACAGATTTGAAGTTGAGTGTAAGACTTTCTCAGACCACATGCCCATAGTTGTGGAATTTTTAAACCAAGCACCTTCTACTGAAACAAATCTTAAACTTCTTCCTCGTCTTTGTTGGAAATATGAACAGAAAACTTCGTTTCAGCGAAATTTAGAAAATTTTTTACTAACTAATGCCTTGCGAACGGAATCCACGGAAGATCTTTCAAATCAACTTACTGAATGTATTCGAAATTCTTATCCAAGCAAAACTATAAACCCGAAGTTATCATTTAAACAGGAATGGTTTGACAAAGAGTGCTGGAAAGCTAGAATAAAGTCGTTCTCCATTTTACGCACAATCCGTTCATCAAACAACCAACACCTTAGGACTTGGTATATCGAAGCCAACACAAATTACAAAAACTTATGTCGTCAAAAGAAAACTGACTTTGAAAACCAACAAGCTCTTCTTTTAGGACAAACTCGAAACGCCAAGGAATTCTGGAAGATTGCGAGGGAAATCAACGGAATGAATTATAAAATCGGTACAGGTGTATCGGCTGAATTACTTGCAAACCACTTTAAACTTCTCCTATCAAATAATTCTAATCTGACAATCTCATACGCAGAACCTTTATGCATTGACGAATCACTAGACTCCGACATCTCTATTGAAGAAATACAATCTGTGTTGATGAAAGCGAAAAATGGAaaggcgccagCTCCTAGTATCTCTTCGACAATGATGGTCCAAATAACAACCGACAAGAGCGGACCAAAGCTAGTTTGTCCTGTATGCGACAAAGCCCTTGTCTCCCTCAACGGCTATGTAAAACACATGAAGAAACATGAACCACCTGGTGGTTATTTATGTAACTATTGTGATGACCGTTTTTGTCTTGAAGATCATCTCAAGAAACACAAAGATGAAAAACATAAAATTTTAGCATGTCAAATTTGCCATGAGACTTTTGATTCACCGCAAGATTATCGCAATCACATACAAGACATCCACAAAGGTGTCGATCGTCGAATGATTAAATGTGAAAAATGTGGCATGGAATTTAAGACTGCTCAAGCTGCCAAGCGACACAACGAGACTCAATGTGGTCAAATCAAACCACATCCCTGTGATCAATGCAAAATGGCCTTTTATACGAAATATAATTTGGCAGAGCATAAAAAGATCCACAGTGGAGAGAAGAAGTTCTGTTGTAGCTATTGTGGGAAGAGTTTTATGAGTAACGGAAGATTGGTTATACACGAGAGGAGTCATACCGGTGAGAAGCCCTATAAGTGCGATGTTTGTGGCAAATGCTTTGCTCATCGTGAAAGTATCGTAACTCATTCCTCAATCCACACTGGAGTTAAGCTCGTTGTTTGTAAGTGCTGTGGCTCAAGATTTTCCTGTCATTCGAACCTTATCAAACACAGACGGACAAGACCCGATACATGTGGCCTGCCGATTTATAATTCCACCAAAGAAACAAAACGAAATGGAAACTCAAGAATCCCTCCATGTCTGATGTCTTCTGAGATAAAAATTGTACGAGCCAGCAAAGTGATTAAGCCCAAGGATGAGCAGCAGAAAAAAACGAAGCCTGTAAATTCAAATGAAGGTCAAAAAAAGCCAAAAGCTTCCAAGCACAAGGGAAGATCCAAAAAAGTCGTCAAATCTGGTTCAGAAGATGACGACACTGGCGAAGATGATAGCGATGACAATGAAATCATCGTAGCTAGACCAAGACGTAGTCTTCGTTCAAATGAACCACCTCCAGTTGAAGAAATCGATACTAAACCACCAGAATCCTCATCTAAGGACTTCGATTCTGACAACTATAGCGATGATCCACTTTTTGATAGTCCAATGCACTCAGTTGATGATTCATCGGATAGTGACAAACCCAAAGTCAAACCAGAGCCTCTGGACAAAAATCCAGTTGAAATAGTTGATCGTAGTTGTAGTCCAGTTAAAAGCGAAGAAGATCAAAAGACCGAGGATTTCTTCGACCAAAAGGAGGAAATCCTCGATAAGTTTCTAGCCGAAAGCACAGTAGATGTTAAATATGAACCTTTAGTTGAAATCAAAGAAGAATCAGAGGATGTGAAGAAAGATGAGATTCCACCGCCTGCGGCGGGTCAAGTCGTCGTCGTTAATGAAACTGAAAAACAAAATGAAAATGAAAAGAAATCTCCGTCAAAGAGAACACGCCGAACGAAGTCGAGCATTGTTCCTTCCGAAGCCTCAGTCGAAGAAAAGAAAAACAACGATGAAGACGAATCTGAACAACCTAAAAAGAGACGCCAGCGTTCGGCGTTGCGTAAGAAACTTCGTTTTTTCAAAAAGGAACGAGTCTACGAATGCAAATTCTGTGCAAAGGTTTATCACATAAAGAAACCCTACGAGAAACATCTCCGGACTCTGCATAAACAAACTGATGCTGATTTGCGTGAATTGTTCAAGGATGAAGATAATGACATTCCTGATGAATACGTGCATCGTTGTCCGATTTGTTCGAAAATCTATCTTATGGCTAAACGACTAACGACTCACATCACTTTCCATGGTCCCGATGGAAGTTTAATTCATAAATGCCCTGGCTATTGCAATTTATACTTCCGCACAAAAGAAGAAGCTCTCGAACATGCCAGGGGAGCTCATAAGGAATGTTTTTATTGTAACATCTGTGATAAGTACTCACAATCACCAGATGCTCTTAAAATACACAAACGAACACATTTCGAACAAAGGAGACAAGCAAGTCGTAATTTGATTTGTGACAAATGTGGGAAGTCATTTGCAAGTCGAACATCTCTCAATGATCATTCGAGGTCGAATTGTGGAAAAGATCCTCTTTATCGATGTGATATATGTGATAAGAGATTTAGTACGGCAGGAATTTTAAAGACACATTCTTTATTGCACAAAGATGAACAACCTTATGCGTGTGATAAGTGCGGAAAGAGGTTCAAAATTAAAGCCCAATATAAGACTCACATTAAGATGAAACACACAGATAACAAACCTTTCAAGTGTGATCTTTGTCCGAAAGCATATCCCTATCGGGAGAGCCTTCTAACGCACATGACTGTTCATACGGGACTCAAACGATACTCTTGCAATGGATGCAGTAAACGATTTACTTGTATTTCGAATCTTCAAGCCCATCGCAAAGTTTATGCTGATACTTGTGGCTTGCAGCCGTTAAATTCAAAACCAAGCACTTATTTGGGAGTGCAGAAAGGCCAGCTTTTAATGGGAACAAAACCTTCCTATTAG
- Protein Sequence
- MLRFNFPDGVPIVEVYTGLDWFSVTPILARSSAFFPFFSLADPTGQLSGYKLMWLEATKSSDKGRASGGTLYGIRSSLLNTFIFDECEGTTIVKCVKEKNMCIVPCYINCNHWKNDFEKLYNTIQSLDSSSMSILLIGDCNARTGKNQIKIAKNISNPSISTNERNSADSVCNKNGVELLQLLQIHGLTILNGCTIGDKDGHLTFIGAQGKSVIDLCAVNDKWIDRVNRFEVECKTFSDHMPIVVEFLNQAPSTETNLKLLPRLCWKYEQKTSFQRNLENFLLTNALRTESTEDLSNQLTECIRNSYPSKTINPKLSFKQEWFDKECWKARIKSFSILRTIRSSNNQHLRTWYIEANTNYKNLCRQKKTDFENQQALLLGQTRNAKEFWKIAREINGMNYKIGTGVSAELLANHFKLLLSNNSNLTISYAEPLCIDESLDSDISIEEIQSVLMKAKNGKAPAPSISSTMMVQITTDKSGPKLVCPVCDKALVSLNGYVKHMKKHEPPGGYLCNYCDDRFCLEDHLKKHKDEKHKILACQICHETFDSPQDYRNHIQDIHKGVDRRMIKCEKCGMEFKTAQAAKRHNETQCGQIKPHPCDQCKMAFYTKYNLAEHKKIHSGEKKFCCSYCGKSFMSNGRLVIHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGVKLVVCKCCGSRFSCHSNLIKHRRTRPDTCGLPIYNSTKETKRNGNSRIPPCLMSSEIKIVRASKVIKPKDEQQKKTKPVNSNEGQKKPKASKHKGRSKKVVKSGSEDDDTGEDDSDDNEIIVARPRRSLRSNEPPPVEEIDTKPPESSSKDFDSDNYSDDPLFDSPMHSVDDSSDSDKPKVKPEPLDKNPVEIVDRSCSPVKSEEDQKTEDFFDQKEEILDKFLAESTVDVKYEPLVEIKEESEDVKKDEIPPPAAGQVVVVNETEKQNENEKKSPSKRTRRTKSSIVPSEASVEEKKNNDEDESEQPKKRRQRSALRKKLRFFKKERVYECKFCAKVYHIKKPYEKHLRTLHKQTDADLRELFKDEDNDIPDEYVHRCPICSKIYLMAKRLTTHITFHGPDGSLIHKCPGYCNLYFRTKEEALEHARGAHKECFYCNICDKYSQSPDALKIHKRTHFEQRRQASRNLICDKCGKSFASRTSLNDHSRSNCGKDPLYRCDICDKRFSTAGILKTHSLLHKDEQPYACDKCGKRFKIKAQYKTHIKMKHTDNKPFKCDLCPKAYPYRESLLTHMTVHTGLKRYSCNGCSKRFTCISNLQAHRKVYADTCGLQPLNSKPSTYLGVQKGQLLMGTKPSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -