Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.51 1.2e+03 0.5 0.0 30 38 22 30 15 30 0.84

2 8 0.0016 3.7 8.5 3.9 14 40 53 76 45 79 0.81

3 8 0.05 1.2e+02 3.7 2.3 12 24 77 89 73 91 0.77

4 8 2.6e-06 0.0061 17.4 0.8 14 40 107 130 100 132 0.86

5 8 0.033 76 4.3 2.0 1 27 123 148 123 156 0.87

6 8 5.7e-05 0.13 13.1 1.0 5 41 155 188 151 197 0.77

7 8 0.0084 20 6.2 3.2 6 41 185 217 184 219 0.80

8 8 0.011 26 5.7 0.1 16 29 238 251 229 262 0.74

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.51	1.2e+03	0.5	0.0	30	38	22	30	15	30	0.84
2	8	0.0016	3.7	8.5	3.9	14	40	53	76	45	79	0.81
3	8	0.05	1.2e+02	3.7	2.3	12	24	77	89	73	91	0.77
4	8	2.6e-06	0.0061	17.4	0.8	14	40	107	130	100	132	0.86
5	8	0.033	76	4.3	2.0	1	27	123	148	123	156	0.87
6	8	5.7e-05	0.13	13.1	1.0	5	41	155	188	151	197	0.77
7	8	0.0084	20	6.2	3.2	6	41	185	217	184	219	0.80
8	8	0.011	26	5.7	0.1	16	29	238	251	229	262	0.74

Coding Sequence: ATGCTGGAAGATTCTATTAAGACCTTAGAGATCGACGATAGTGACGAAGACATTAGAGATGATGACAATACCAGCAATTTCTCGGCACATAACGATAGTGATAGCATGAGCGATTCCAATCAGGAATTCCTAGACGATTCCACTTCTGAACACACAAACCGTTCATTTGAATGTTCCATTTGTAATAAAACCTTGAAAACCAAACACTCTCTAAGAAATCATTTAGATACTCATAAAACTGAAGTCAAATGCAAAATTTGTGGCGCACTGTGCAGAGATGAAGAATACCTCGAGTTACATATGAACATCCACGAAGGAAAAACAGAAAACGAATGTCGCTACTGCCCTAAACGGTATTCCCGTCGTTCCAACGTAATACGTCATATGCAATTCCATTGGGATAAAAAGAAATTTCAGTGTGAAAAATGCGGCCTTCGATTCTCACAAGCCCACATTCTTTACAATCACAAAATGGTGCACGAAGCCGAAGAACAACCTATAATATGCCAAATTTGTGAACAGTCTTTTAAATCGAAAAAAACTTTCAGGCACCATATGATAACCCATCAAGAAGATCGCCCAATGCATCCTTGTGAAATTTGTGGAAAGAAATTTACCGAAAGGTACACCTTGAAGATGCATTTAAAAACACACACTGCTGGTAGGGAGGAGGAACCGGAGACACCAAAGAAAATAAATGCCCAACCCAAAAGATTCCCTTGCATTATATGTGAAAAAGTGTTAACCACAATGGAGAGCCTGGAAAACCATCGCGCAAAAGAACACGATGTTATTTGTTCTGAAACTATTTTCGTACAGTTTAACAATGTTTAA
Protein Sequence: MLEDSIKTLEIDDSDEDIRDDDNTSNFSAHNDSDSMSDSNQEFLDDSTSEHTNRSFECSICNKTLKTKHSLRNHLDTHKTEVKCKICGALCRDEEYLELHMNIHEGKTENECRYCPKRYSRRSNVIRHMQFHWDKKKFQCEKCGLRFSQAHILYNHKMVHEAEEQPIICQICEQSFKSKKTFRHHMITHQEDRPMHPCEICGKKFTERYTLKMHLKTHTAGREEEPETPKKINAQPKRFPCIICEKVLTTMESLENHRAKEHDVICSETIFVQFNNV

Sequence clustering based on sequence similarity using MMseqs2