Euro024045.1
Basic Information
- Insect
- Eupelmus urozonus
- Gene Symbol
- zfh1
- Assembly
- GCA_900480035.1
- Location
- UELX01001868.1:30163-34651[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00012 0.014 16.4 4.2 2 23 83 104 83 104 0.97 2 15 0.064 7.2 7.8 3.0 1 23 110 133 110 133 0.97 3 15 5.9 6.7e+02 1.6 1.7 1 17 140 156 140 167 0.66 4 15 2.9e-05 0.0033 18.3 5.1 1 21 169 189 169 191 0.95 5 15 2.1 2.4e+02 3.0 2.7 2 23 197 219 196 219 0.89 6 15 2.7e-05 0.003 18.4 3.4 1 23 226 248 226 248 0.96 7 15 0.18 20 6.4 0.6 1 23 454 477 454 477 0.96 8 15 0.012 1.4 10.1 6.8 1 23 483 505 483 505 0.98 9 15 2.6 2.9e+02 2.8 2.2 1 23 513 536 513 536 0.93 10 15 1.5e-05 0.0017 19.2 0.5 1 21 542 562 542 563 0.94 11 15 0.0002 0.023 15.7 1.0 1 23 569 591 569 591 0.98 12 15 8.7e-05 0.0098 16.8 1.4 1 23 597 619 597 619 0.98 13 15 4e-07 4.6e-05 24.2 1.2 1 23 623 645 623 645 0.98 14 15 2.8e-05 0.0031 18.4 0.1 1 23 651 673 651 673 0.98 15 15 7.6e-05 0.0086 17.0 1.0 1 23 679 702 679 702 0.98
Sequence Information
- Coding Sequence
- ATGGTAAAGAAACAGCCAATGGATCCATCCGATGCACTCTTATCCGTAAAAACGGAAAACGATCTCAGTACATCAGCAAAAGCATTCAAGAAACCGAAGTCTAAAGAAACTAAAACATTCACTTTGGAACTCGAGAGCCACCCAGAAACTTCAAACTCCTCTGCCACTACAGCAAAAGAAGAAATTTCCGTCATCGGCTCTGTAACAAATTTCGAAACCGCGGGTCCCGCTCATCTCGACGACCGCACCTGTCAGATCTGCAACCGCAGCTTCAAGCAGCGCCACTGGTACGAGAGCCACATGACCAAGCATCTCGAGTCTCGGCCCTACAAGTGCTCAATCTGCCAGATTCCCTTCAAGTGCCAGCTCTACCTCGATCGCCACACCAAGAGGGTGCATACCAACAATATCCGGCTGTATCCCTGCGACCAGTGCGATCTTCAGGCGCGATCGAAGAACAGCCTCCTGTGTCACAAGGCCTTTAAACACAGCCAAAGGTACAATTTCCAGTGCGAGCGCTGCGACAAGAAGTTCAAAACGAAATCGGCACTGAAGCAGCATGTACGTTGCCACGAGTCAGGCCCATGCATCTGCGACGTCTGCGGCAAGCTGTATCCTCACATCAATGCACTAAACTGTCACATAAACGAGAAGCACACCGTCAAGGTGAAGGATCACGAGTGCGAGGTTTGCAAGAAGAGATTCACAAGCCAAAGAAATCTCGAGCAGCACAGCAAACTGCACAGGATCAAGATGCAGACCTTCTGTTTACAAGGCCTCAGCAATCAAGTTTTTTTCATCAGCGTAAAAAATGAGGCCGAAACGCAGAAGCAAGAACAATTGTCGGAGCCGAATTCGcttcaacaacagcagcaaccaCTGTTAGTACTACAACAACCTTATCAGCAGCAACCATTTTTGCTTGTGTTGCCGCAAGCCCAACAACAGCCGCAGCCGTCATTAGTGGCACAGCAATCGCAATCGCAGCAGAAGCAACTGATTAAGAATAAAAGCAGTTCTCAAGATCCGTTATTACAGCTTCCTACAACTGCTCAGACGAAAAAGtcagttaaaaaaagaattacgaaTCCAAAGTCCAAAGAGCTAAAAACACCGAAATTGTCGAAAGCACCTAAACAATCAAAGAAGTCAACAAATACTCTGAAATCTAAAGAGCCTGCTATCGATCGCGAAGAGCCTGATCAAAACCGTGCAAATATAGGCGATAACAAGCAAATTGTGCTGGCAGAAGAATCGACATCTGCTGCTGTCGATGAGCCCGTGAATGAGGATAGCGATTACGACAATACCACAGACGCAAACATGATGGAGATCTATACTCGGCTCCCTGACGGTGGCTATCGGTGCAACGTTTGCATGAAGATTCGCACGCAACGCCGTTACATCCTCGCGCATATTCGCGGTCAGCATAGCCACTTAAGACCCTTCAAGTGCTTATCATGCGCTTGCTCCTTCAAAAGCAAGCATGCCTTAAAAACCCACCAGCTCAAGCACAACCTCAAACACGGCGAAATCTATGCATGCGACAAGTGCGAGTATCGTACGCAGTTGAAGGGCGCGCTACACTATCACTACTACCGCATGCATACAGATGAGTATCGCTTCACTTGCGATCACTGTGGCAAGCGATTCAAAGTTAAGCGCGAACTCGCCGATCATCTGGCCACTATCAGTGGCGAAAAGTACATGTGCGATATTTGCGGCAAATTTTACAGAGGTGAGCACTTGGTCAGGGTGCATAGAAGGGTGCATTTCGATCTGTACAAGTTCCAGTGCACAGTGTGCAAAAGAAAATTGGCCACAGAGAAGAGCTTGAACAATCACATGAAGCTGCACAGTAGAACCTACGAGTGCGACGAATGCGGAATGAAGTTTCCCAACAAGCATAATCTCATCAAGCACAGGAACGTACACACCAGGGAGCAGGCCTTTACTTGTCCCGAGTGCGGCAAGATCTTCGCAGATCAGGCTACGCAAAAGGTGCACTCGCTGACACACGCAGGCCTCAAGCCATACAGGTGTAATGTTTGTGGTATGAGCTTCACGCAGAGGACGCCGATGATGATGCACTGGAGAAAGAAGCATCCGGGCGAGACAGAGCCGCCACCGCCggttattctgaaaaatatactCAAGACTCTTGAAGagcaaaacgagaaaaaaaaagaaaaagaagaaaaagtagaaatatgA
- Protein Sequence
- MVKKQPMDPSDALLSVKTENDLSTSAKAFKKPKSKETKTFTLELESHPETSNSSATTAKEEISVIGSVTNFETAGPAHLDDRTCQICNRSFKQRHWYESHMTKHLESRPYKCSICQIPFKCQLYLDRHTKRVHTNNIRLYPCDQCDLQARSKNSLLCHKAFKHSQRYNFQCERCDKKFKTKSALKQHVRCHESGPCICDVCGKLYPHINALNCHINEKHTVKVKDHECEVCKKRFTSQRNLEQHSKLHRIKMQTFCLQGLSNQVFFISVKNEAETQKQEQLSEPNSLQQQQQPLLVLQQPYQQQPFLLVLPQAQQQPQPSLVAQQSQSQQKQLIKNKSSSQDPLLQLPTTAQTKKSVKKRITNPKSKELKTPKLSKAPKQSKKSTNTLKSKEPAIDREEPDQNRANIGDNKQIVLAEESTSAAVDEPVNEDSDYDNTTDANMMEIYTRLPDGGYRCNVCMKIRTQRRYILAHIRGQHSHLRPFKCLSCACSFKSKHALKTHQLKHNLKHGEIYACDKCEYRTQLKGALHYHYYRMHTDEYRFTCDHCGKRFKVKRELADHLATISGEKYMCDICGKFYRGEHLVRVHRRVHFDLYKFQCTVCKRKLATEKSLNNHMKLHSRTYECDECGMKFPNKHNLIKHRNVHTREQAFTCPECGKIFADQATQKVHSLTHAGLKPYRCNVCGMSFTQRTPMMMHWRKKHPGETEPPPPVILKNILKTLEEQNEKKKEKEEKVEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -