Ekie005737.1
Basic Information
- Insect
- Eupelmus kiefferi
- Gene Symbol
- -
- Assembly
- GCA_030522745.1
- Location
- JAPYZB010003496.1:2089-8898[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0099 2.5 10.8 0.6 2 20 382 400 381 402 0.93 2 10 2.1 5.2e+02 3.5 0.1 2 11 620 629 619 631 0.87 3 10 0.009 2.3 10.9 1.4 2 23 678 700 677 700 0.96 4 10 0.011 2.7 10.7 0.2 2 21 710 729 709 730 0.93 5 10 2.8 7.1e+02 3.0 1.0 1 23 830 853 830 853 0.94 6 10 0.019 4.7 9.9 0.1 1 21 858 878 858 879 0.93 7 10 0.027 6.7 9.4 3.9 1 23 886 909 886 909 0.93 8 10 1e-05 0.0026 20.1 2.9 2 20 917 935 916 937 0.94 9 10 0.14 35 7.1 1.6 2 23 946 968 945 968 0.95 10 10 0.044 11 8.7 1.3 1 22 977 998 977 998 0.94
Sequence Information
- Coding Sequence
- ATGTGCAATGATATAGATGAAAGTAGGAGTAATTCATATGAGCCAATGTTAATTCAAGAGCAAAAAACTGATTCATCTTTAGAAGTTAACGAAATGCTTGCGAGTGAAACATCAGATAATGAATACTCATCCCTAAAAGTAGAAGATAATAATAGAGatatTGTACAAATAGATATTGCTGAAGAAAGTAACATGATCGATGTTAGCGCAAATAATTCTACGACAGAAGATATAAGAGAATCACATAATACGGAGCCAATGCAAGAGGATGTATCTGATACCAGCTCTGatatTATACAAATAGATATTGCTGATGAAAGTGACATCGAGCTTTGCACTAATAATTCTACGTCAGGAGATATAGGAAAATCAAATAATGCAGAGCCAATGCAAGAGGATAATTCTGACGAAAGCTCTGatgATGAAAGGATCATTCGCGATGTTTCTATCAACGATGAAATAGAAATTGAAGATGAAGTTAAAgttgaAACATCAACATATTCGTCTCAAGCAAATACTACTACTAATAATGACAGACAAAGGACACCGTCTGTACATGAGCCTGTTGAAAAACGAAGATCAGATTCATATACTGacgaAGGGGTCAGTGATGTTGATATGTCAACAGAAAAAAGCTCATCTAACAAAAGAAACGTGCGGAAAAAGCCAGACGTCAAACCAGCTGGTACTACTTCCGctAAAGCGGTTAATGATGCTGGCAATAAAGCAGGAAGCATATTCATAAGTTTAAAAGATGCTTATGAAAAAATAACCGCTGATATAAATACTgGTTCATTTGAGTCTTACTATTTTAACATCGGTAACAATATCAGCTGTTCAGATAAGATTCCTGAGTTATTACACATTTCCGATAGTTCAGATGATGAGGTAACAATTATTGAAGATGATGATTTGTCAATTATTGAAAGTCAACCTTCTGCATCTCGGACTACTGTAGCTGAACGCGATAATGCAACGGCTGCTGCTAAAGACAGTAAAAAGAGATATGAATTGCGGGTAGAAAGAAGAACTATAAAACGATTGATTGAGGTCGATAGCGGTGACGAAGTGAGTACCGAAGTTCGTGAAGCAATCAAGAgaacagttttaaaaaGTGGAAGAGTTCCCAAAGAAAGTCCTCAGAAATGCCCAAAGTGTTCAAAAGTGTATTTTGGAAACGACAACATGAGAAAACACAGCAAGTGGTGTGGTGTGAAACCGTTTTTGGCGTGTCCGCTTTGTCCTGCTGGTACGTCCGTTGCGTCCAGTGCTACTGGTGCATCTGATGCGACTAGTACGTCTTGTACGACTGGTGTATCTCGTGTACCTAGTGCATCTGGTGCGCCTAGTGCGTCGAGTACGCCTGGTACATCCGGTGCGCCTAGTGCATCCAGTGCGTCCACCTCGTCCAGTCAGACCTTGTATAAACACAAAAGAAGTCTTTTGAGTCACATTCAGTCGAGGCATCAGGAACGAATAAGGGAAGCGGACGGATCGCAGATGATCTACGACATAATTAGCAAGGCTAACCAGACTTCTAAAGCAATTGAACCCGAACCAGGAATAGCAATAAGTTTACCAAAAGAAACAACTGTGAAAAGTTCATCAAAGATTTTACCAGAACCAGTAAAGAGCGGTCCATCAAGTTTAGTTTTACCAAGAAGGGCACCGGACCCGCCTACATTAACTGTACCAAGAAGAACAGCGGTGCCTTCAACAAGTGTATCAAGAAGACCAAATTTGATAACTTGGGCAAATTATTCAAATAGAGAAACAAGGACAAGGAGTTTATCAaggctaaaattaattaatcagcgTGATCGAGTATTAATAAGCATACCACAGTACATAAAACTGTACTGCCAGGGCTGTGGGAGAACTTACGCCGACGTACCGGCGTCTTACAAGAAGCTCTGCGAGGTCTGCAGGCTGCCGCTGCAGGTCGATTGCGAAATGTGCAAGGCCCAAGCAGTCAGCATTCAGTGGTTAGGCGTACATCTGACCAGCATGTGCACAGGCAGTCCGCTTCAGGAGTGTCCTCACTGCAGGTACACCAGCAACAACAAGGCGAGCATGCAAGAACACATAATCAGGCGACACGCATATATAGATCCGGAGGATTTCGTACCTTGTCCCAAGTGCGACAGAATGTTTCGGCTACACGAGTCCATGGTCAAGCACGCCAGGTATTGCGGCATGACCAAAGATCTCTATTGTCAATTTTGCCCGTTCAAAACCAAACATCGTTCCGTAATCAAAGTACATCATCAGCAGCACGCTATAAATTGTACAGGAGACGAGATGAAGTCGCGCTTCGGCAAAGGTCATAAATCAATACCAgaaagagaacaaaaatttcataaattaatgaaGGAATCTGAAGAAAATATTCGAAAGTATCTGACGGCAATGTGTTCAAGGTGTTTCTTGCCATCAGACATGAAAAAATCTCGCTACCAATGTGCTTTTTGCAGTAGTCCGCTACGTTACAGATGCGAAAGGTGCTTTCGCATCCGCGACAAGCTCTATACGATGCGCGTCCACGTGCTCCGTGTGCACGCTGAAAAACTCTTCGAATGTTCGAACTGCGATAAGTCTTATGGTTTCTGGAGAGATTGGGACGATCATATGGAGCGCTGCGGCAAATTGCCGAGTCACATTTGCAAGTATTGTAACTTCGGGACCTACTACAAAAAGAATCTTATACAGCACATGACACAGCGACATGCCAAGGTAAGCGAGATGTCGCGGTGCCATAAATGCGGCAAGACATTCGCCTCTAAGTCTACGCTCACTCGGCATGTAACTCACTTCTGCGGCGTCGAGCCCCGTCTCAGCTGTGCTCACTGCAGTTTTAGAACGAGAGCCAAGTTCAGTCTCGTGCGCCACATACAGTCCATACATGCTGATTTATTTGACAACTGTCAGTTCCATTGCGATTACTGCGGCGAGAAGTTTCTTAGGATTTACCTGTTTGAAAACCATAttaaaaaatgtcgaaataAGACTTTGTATAGAAACATGGTTATAGTTGGTTAG
- Protein Sequence
- MCNDIDESRSNSYEPMLIQEQKTDSSLEVNEMLASETSDNEYSSLKVEDNNRDIVQIDIAEESNMIDVSANNSTTEDIRESHNTEPMQEDVSDTSSDIIQIDIADESDIELCTNNSTSGDIGKSNNAEPMQEDNSDESSDDERIIRDVSINDEIEIEDEVKVETSTYSSQANTTTNNDRQRTPSVHEPVEKRRSDSYTDEGVSDVDMSTEKSSSNKRNVRKKPDVKPAGTTSAKAVNDAGNKAGSIFISLKDAYEKITADINTGSFESYYFNIGNNISCSDKIPELLHISDSSDDEVTIIEDDDLSIIESQPSASRTTVAERDNATAAAKDSKKRYELRVERRTIKRLIEVDSGDEVSTEVREAIKRTVLKSGRVPKESPQKCPKCSKVYFGNDNMRKHSKWCGVKPFLACPLCPAGTSVASSATGASDATSTSCTTGVSRVPSASGAPSASSTPGTSGAPSASSASTSSSQTLYKHKRSLLSHIQSRHQERIREADGSQMIYDIISKANQTSKAIEPEPGIAISLPKETTVKSSSKILPEPVKSGPSSLVLPRRAPDPPTLTVPRRTAVPSTSVSRRPNLITWANYSNRETRTRSLSRLKLINQRDRVLISIPQYIKLYCQGCGRTYADVPASYKKLCEVCRLPLQVDCEMCKAQAVSIQWLGVHLTSMCTGSPLQECPHCRYTSNNKASMQEHIIRRHAYIDPEDFVPCPKCDRMFRLHESMVKHARYCGMTKDLYCQFCPFKTKHRSVIKVHHQQHAINCTGDEMKSRFGKGHKSIPEREQKFHKLMKESEENIRKYLTAMCSRCFLPSDMKKSRYQCAFCSSPLRYRCERCFRIRDKLYTMRVHVLRVHAEKLFECSNCDKSYGFWRDWDDHMERCGKLPSHICKYCNFGTYYKKNLIQHMTQRHAKVSEMSRCHKCGKTFASKSTLTRHVTHFCGVEPRLSCAHCSFRTRAKFSLVRHIQSIHADLFDNCQFHCDYCGEKFLRIYLFENHIKKCRNKTLYRNMVIVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -