Ekie032807.2
Basic Information
- Insect
- Eupelmus kiefferi
- Gene Symbol
- -
- Assembly
- GCA_030522745.1
- Location
- JAPYZB010042189.1:1134-2805[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.058 15 8.3 0.1 2 23 69 91 68 91 0.93 2 11 3.8e-06 0.00095 21.5 1.2 1 23 99 121 99 121 0.98 3 11 0.01 2.6 10.7 0.4 2 23 172 195 171 195 0.95 4 11 6.1e-05 0.015 17.7 3.3 1 23 198 221 198 221 0.97 5 11 0.0026 0.66 12.6 0.4 2 23 228 250 227 250 0.95 6 11 0.00021 0.052 16.0 4.8 1 21 291 311 291 312 0.94 7 11 0.00079 0.2 14.2 1.8 2 23 326 347 325 348 0.93 8 11 0.37 94 5.8 3.3 1 23 351 373 351 374 0.95 9 11 0.0023 0.57 12.8 0.9 2 23 381 404 380 404 0.93 10 11 0.28 71 6.2 0.2 2 23 412 434 412 434 0.95 11 11 0.84 2.1e+02 4.7 0.0 2 23 441 463 440 463 0.89
Sequence Information
- Coding Sequence
- ATGTTAGCAGCGTGCATGGAAATGAGTCCGCTATTAGAtGTGAACGCGATGATTGCGGAAAAATATTTGCCACGAAAACGCTACGCAACGATCACGCGCAGCATCACCAGCTTCAAGGCAGCTCTCCGTTGCGGCAAGCTGTGGGGCAGTCGCGTCGACTACTGGAAGCACGTGATGGGCGTTCATGCCGACACGGTGCCCCTCATCTGCGGAGTTTGTCTCAAGGTGTTCCCCGACGTACTTCAGCTTAGTCAACACGTCAAGCTGAAGCATTGGCCACTCACCAATGGCGACTTTAGCTGCGACATTTGCGGCAGGCCGTATTCGAACAAGAGCAAAATGTCGAGGCATAGAAAGATTCATGGCCTGGATGGCGAGGCATATAATCCTTCGGCAAACAACAGCAACTTAGTTATGAACGACTCGTCCATAAACGATACATTTAgtCTGCCGATGCCGCTACAATTAGACAATGGACTACCGCATCCGATCGAGCAGGCCTCGGTCGATCTGTCCTGCGAGATGTGTGGCGACCTCAAATTTCCCACTCTCGAAGATCTATGCAACCATCGGCGCGTAGCACACAGTCTCTTCCCATGCGACCTCTGCAATAAGTGTTACGGTCGCACCTCGCACCTCTGGAAACACGTAAACCGCGTGCACAAAGGTCATGAAGACGTGACCTGTCGCTACTGCCTCAAGACGAGTGCCTCAAGAGAGCACCTTGCCGCCCATATCGCGAAAATTCATCGCTACGAGCCTGAGGTGAAGAGTGAATTCAGAGAAGTAATGAGTTACAAAAGCAACTACAATGCTGCGGCTGCTGCAGCAGCATCTTCTATAAAAATTGAAGATGATGACAACGTGCTCCATTTCTGCGAAAAGTGCAACAAATCCTTCCACAAGCGGTATTTGCTCCGTCGTCATATGAAGGGCTGTCAGAACTACCGTAAGGATCCGGGCTCCCTGCTAACGCGCTGTCGCGCTTGCGAGCGCATTTTCAAGGACAGGGCGAGCTTGCAGAAGCATATTGAGAACCACCATAGCTCGTTCGAGTGTCATCTATGCAAAGAaaccataacctccaagcttgGTATCATGACGCACAACCGCATGCACCACATGCACCATCCAGATCTTACCTGCGAGCTCGAGAACTGTCGCAAGCTATTCAGAACAAAAGAGGACCTCGAATCGCATCGCAAAGATCACAAGCTCCCCGATCCACCAAATGTCTGCGACTTCTGCGGAGATACAGTGGAGAACAAGCTCAAGTTGAAGATGCACATTTTGAGCTTACACAGAAACGAAATCGGAGTTTCTTGCGGCGTCTGCTTGATCCCAATGAAGGATCCTAAAGATCTCAAGAAACACGTGGAGGAGGTACATGAAAGCATTCTGCTAAGGCCCAACACCTGCCAGGTAAAATATatctctaatatttttattatttatggtaGAAAAGGCTTCTTCGTACTCATCTTATAA
- Protein Sequence
- MLAACMEMSPLLDVNAMIAEKYLPRKRYATITRSITSFKAALRCGKLWGSRVDYWKHVMGVHADTVPLICGVCLKVFPDVLQLSQHVKLKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDGEAYNPSANNSNLVMNDSSINDTFSLPMPLQLDNGLPHPIEQASVDLSCEMCGDLKFPTLEDLCNHRRVAHSLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRYCLKTSASREHLAAHIAKIHRYEPEVKSEFREVMSYKSNYNAAAAAAASSIKIEDDDNVLHFCEKCNKSFHKRYLLRRHMKGCQNYRKDPGSLLTRCRACERIFKDRASLQKHIENHHSSFECHLCKETITSKLGIMTHNRMHHMHHPDLTCELENCRKLFRTKEDLESHRKDHKLPDPPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKKHVEEVHESILLRPNTCQVKYISNIFIIYGRKGFFVLIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -