Ekie000730.1
Basic Information
- Insect
- Eupelmus kiefferi
- Gene Symbol
- -
- Assembly
- GCA_030522745.1
- Location
- JAPYZB010000239.1:15561-17204[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.11 27 7.5 0.4 3 19 127 143 126 145 0.94 2 10 2.1e-05 0.0054 19.1 0.6 1 21 163 183 163 184 0.96 3 10 1.5e-05 0.0037 19.7 1.2 3 23 221 242 220 242 0.96 4 10 0.028 7.1 9.3 0.1 2 23 247 269 246 269 0.93 5 10 8.1e-05 0.02 17.3 0.9 3 23 277 297 276 297 0.95 6 10 0.00024 0.059 15.9 2.3 3 23 306 329 304 329 0.88 7 10 1 2.6e+02 4.4 8.7 1 23 338 360 338 360 0.98 8 10 0.87 2.2e+02 4.6 1.1 2 23 367 387 366 387 0.95 9 10 2.6e-05 0.0065 18.9 0.3 3 23 395 415 394 415 0.97 10 10 4.9e-06 0.0012 21.2 4.1 1 23 421 443 421 444 0.96
Sequence Information
- Coding Sequence
- ATGAGAATGCCGGCAATTCTGCAACGAAAGCGAAATATCAACTCTGCGAGCACAATTTCGCAGCAGTCCTGCGAAGCcgcaaaaaagattattatagtCAAAGGTATTGAAAAACCATCAGTCTTTAGTCCGGCGATGCTATCGAAACCATCATCGTCTCTGAACCAAAAGATAATCATCAACCAAAAGAATATTGAATCAGTTCTTAAAGACTTAGATGGAGTAATCGTCCTGAAGCCATATCGTCATTCCAAAAAAGATGACGATCCCTTAGCGACTAATGTTGCTTCTTCTGACAATGAAGACAATCCCGAAGGGGACCATCAGAATGCAGAAGAAAGTATAGTGCAACAGGAAGATCTGGCAGAAACAATCTTGTGCGACTCGTGCGACGAGAGATTCGAGCATCGTTCCTCCTGGATAATACATAAAACCGAAAAATCCATTCTGCGAACGCGAGCTGCTCTTCGCGATCCCATGATCAAGTACACTTGTGACATGTGCAAGAAGCAGTTCGTCACAAAGGGCATGCTAGCTCGGCACTACCGTAACTGTGGCATCGTCGAGCTTGAGTCCCTGCCCGCCAACTATCGTAAACGGAGAGCTCGTAATCCTAGAAAAAGTAAAGATAACGGCAGCGCTGAAGAAGGCCCAGCTGCGTGTGACAAGTGCAACAAGGTATTCAAGAAGCAAAAGTACCTAAAAGTCCACCAGACGATGGCCCACGGCGACCACATTACCTGCCAGCTCTGCGACGCCCGTTTGGATTCGATGTCGCTTCTTAAAACCCACATGACCGAAGTGCATAGTGGCGACTACACCGAGTTCTGCTCGATCTGCGGTAAGGGCTTCTACCATCGACAATCTCTAAAAGTCCATTTAGCAGCGCACACACGTGATAACAAGCCTTGCGTCTGTATGTACGACGATTGCGGAAAGAGCTTTCGCCACGAAGTTTACTTGCGTAAGCATGTACAACAGGTGCACGTTGAGCTGCGCGGCCGTAAGAAGTATCATTGCGACGAGTGCGGCTATGAGACGCACTATAAAACCTGCTTTCGTGAGCACATGTACAAACACACAGGCGAGGATTTGGTAGAGTGCGACGTCTGCAAGAAGCACATGCGCAAGGGGTACATGAAGATACATGCTAGGATACACACAGGCGAGAAGCCCGAGATTTGCGAGTACTGTGGCAAAGGGTTCAGTGCGAGAAAGTACTTGGCGAAGCACAGGATAACGCACACGGGCGAGAAACCGTACCAATGCCAGATCTGCGGCAAGAGGTATACACAGAGAGGGACGCTGACGCTGCATTTCAGGAAACACCATCCTCATGATACGCTGAGCAGTTCGAGAGGCGCTATGAGAAGAAAGGTGGTTCAAGAGCAAGTTGTCGAGGAGATGTTGGCAATTGAAGAACCGTTAGAAGTAGTAGTCGAGGAAGCCACAGAAGAAGTGGTCGAAAAGATGGAagaagaaaatacttttatagtgATCGCTCATGAAGGAGAGGAGGAGGAAGTAGATGGAAGGGTAGAAGTATTGGAAGAAGGCGAGATCATGGAGGATGATATGCAAATTCTCGAAGAAGATTTAGATGAGCACGAGGAGGCGCAAATTGTAGAAGATTCGGTTACTTAA
- Protein Sequence
- MRMPAILQRKRNINSASTISQQSCEAAKKIIIVKGIEKPSVFSPAMLSKPSSSLNQKIIINQKNIESVLKDLDGVIVLKPYRHSKKDDDPLATNVASSDNEDNPEGDHQNAEESIVQQEDLAETILCDSCDERFEHRSSWIIHKTEKSILRTRAALRDPMIKYTCDMCKKQFVTKGMLARHYRNCGIVELESLPANYRKRRARNPRKSKDNGSAEEGPAACDKCNKVFKKQKYLKVHQTMAHGDHITCQLCDARLDSMSLLKTHMTEVHSGDYTEFCSICGKGFYHRQSLKVHLAAHTRDNKPCVCMYDDCGKSFRHEVYLRKHVQQVHVELRGRKKYHCDECGYETHYKTCFREHMYKHTGEDLVECDVCKKHMRKGYMKIHARIHTGEKPEICEYCGKGFSARKYLAKHRITHTGEKPYQCQICGKRYTQRGTLTLHFRKHHPHDTLSSSRGAMRRKVVQEQVVEEMLAIEEPLEVVVEEATEEVVEKMEEENTFIVIAHEGEEEEVDGRVEVLEEGEIMEDDMQILEEDLDEHEEAQIVEDSVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00690555;
- 90% Identity
- iTF_00690555;
- 80% Identity
- -