Ekie008835.1
Basic Information
- Insect
- Eupelmus kiefferi
- Gene Symbol
- -
- Assembly
- GCA_030522745.1
- Location
- JAPYZB010006012.1:1744-4850[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.019 4.7 9.9 0.4 3 21 8 27 6 28 0.85 2 14 1.7 4.3e+02 3.7 0.0 2 20 34 52 33 53 0.92 3 14 0.13 34 7.2 0.1 1 12 231 242 231 245 0.93 4 14 0.096 24 7.7 0.7 1 20 373 392 373 394 0.94 5 14 7.2e-05 0.018 17.5 0.3 2 23 399 420 399 420 0.97 6 14 0.037 9.4 8.9 2.4 1 23 431 453 431 453 0.95 7 14 1.5 3.9e+02 3.9 0.1 1 23 472 493 472 493 0.77 8 14 0.0013 0.33 13.5 0.0 2 23 499 520 498 520 0.95 9 14 6.6e-05 0.017 17.6 4.8 1 23 586 608 586 608 0.99 10 14 8.1e-06 0.002 20.5 5.0 1 23 614 636 614 636 0.98 11 14 0.00018 0.044 16.3 4.6 1 23 642 664 642 664 0.98 12 14 2e-06 0.0005 22.4 0.8 1 23 670 692 670 692 0.98 13 14 0.00013 0.032 16.7 0.2 1 23 696 718 696 718 0.99 14 14 0.00026 0.067 15.7 0.1 1 23 726 748 726 748 0.97
Sequence Information
- Coding Sequence
- ATGGGTTCGATAAGCCTGATGTGTCCAATGTGCTGCGGAGAGACTTTTAACAACTCAGAGTCTCTCAAGTACCATTTGTTGAGCATGACGGATAATTTGTACTGCCCTGGGTGCTCGTTGAGGACCTACTCGGTGGCTGCTTTGATACAGCATTTAGATTGCTGTGGAAAAGAAATGGAGCAGGAGGAGCAGCCAAGGGATACAGAGATTAATACCAATGATTTGGTAGCAGGTGATACTGACAGAGATGAATCGGATATTTTAATGGATGATAATGACGATGGGATAAATGACAGCTTTCTAGCGACTGTCAATGATGAAGGAATTATGATTGTTGGTGAAGGCAGAACTATACAGGTGGATGAAAACGGGGACATACAAGTTGTAGGAAAAGCGCATTCCATAACTGAGGAACAATCCTTGCCTCTTGTAAATGGTGATAAAGATCTGATGAATGATTCAGAAGAGCCAAAAGAAGTTAACGAAGCTTCTGTTATGTTAGAAGAAAACTCAATTCTTAATTCAAAAGGGGAAGATGCTATATCAAGTATGTCTGATACAGCTGAATTGTTAAATGAAAATACTACATTGATTAGTATGGCACAAGTTGATCTAAAGTTGGATGATATgcttacaattaaaaaagaatcaagCCAAGAAACAGAAAATGATCAGGATTCAGAGATAATGTATAGTTGCAGTACATGTGGAATGAGTTTTACTTCTGTATTAGAGCATATAAAGGAATATCATGATGGTCAAGAAGTTGTTTTGGAAATGGCTGAACAACAAATGGATGAATTAGAAACAACACAATCAATTCTTCCAGCTTCTGAAGTTACTATTGAACCACCAGTAAGTACTTCAACTAGCACTGTACAAACGACTGCAGCTCCTACAAAACAAAGACAGTCAATGAATACCTTAAGAACAGAAGAATGTATTGATAGTGATGGTAGATTATATACAAGGAAAGTTGTACAAATTGAAAGGTTTTGGGACCGAACTCCTGTTACTCTTTCCACCACCAAAGCTccaatgattgaaaaatttttttccaatgtTGAAGGAGTTAAGGTTAGAGATAAAAGTGTAACTGTTGCTCCAACGAGAATGTATAGGTGCAATCAGTGTTTAGAACAGTTCGCTAAGTTAGGTGATTTTCGCGTTCACGTGTGCCTTCAAGGAAATAATCGATGCGATCAGTGCGATCAAACGTTCGCGACGGCAAAAGCATTGCAGACGCACGCGAAAGTGCACGAAAACAGTGATTTCCCttcgcaaaaaatatttttatgcacaGTCTGCGGCACGGAATTCCTGACGCACAAGAGTCTACGCCTGCACTCGAGGATGCATGCCCCAGTCAGGGCGCGACATGTCGACGCGCCTGAAGGAACGGAAGAAGAAACTTTCGTCTGCGCCGAATGCGgcaCAACGCTCTCAGAATCCTATCGGGGAGCACACATGGCTCTGCATGCCGGAGATTCGATCACTTGCACGGTGTGCAATCGCAAGTTTGACTCAGCTGAGAGCCTGGCGATGCATGCGGCTGTTCACATGGATGTGAATGCTAGTCCAAGCTCCAGCACCGCTACAGCAGTCAACGATCTTGTCCTCGCCGCTGTCTCCTCTGGCGTTACAAACTCCCAAGATCCTTCCGAGCCGGAGTTCATTAGCACTGGCACGACCATGGCTACGAGCACTGCTACGTCGACGCCCGCTGATTCGGCCGAAGTCCAGAGTCAGAAGCCTTACCAGTGTCAGCACTGCGGACGAAGGTTCACCAGGCCTCATGAGAAAGTCAAGCATGAGAGAATACACACCGGTGAAAAGCCACATTCCTGCGAGGTTTGTGGCAAAAAGTTCCGTGTCTCATACTGCTTGACGCTACACATGCGAACACATACGGGAGTGCGGCCATACGAATGTCAACATTGCGGCAAGCGATTCAAAGCTTCTTCTGTTTATAATCACCACCTCCTGACCCACGGCGAGGAGCGAGCTTACACCTGTCCGTATTGCCCTAAGACCTTTAAAACCAGGGTACAGCTAGCTGGTCACAAGAACAGTCATACCAAGCCGTTCCGTTGCACTGAGTGTTCCAGACCATTCGCTTCGCTTTATGCCGCGCGAGCCCACATCCAAACTCACAAAAAAGACAATAATCTCAAGTTCAGCTGCAATATTTGCGGTGCATCGTATGGCCGGGCGTTCGCCCTTAAAGATCACGTGAAGCAGCATGAGCGAGAAAACGTGGTGATGCCACCCGAGCCTGCCCGAGAAGAAGAAGTCCAGGTCGATAGTTTCCTGCTGCAGGATGATGAAGACGAGGAGGAACTTATCGTGCCTTCGCCACCGCCCAACTGTGATCCTATTCAGACGGAACTTGATGATGAGTTTAAGGAGTAG
- Protein Sequence
- MGSISLMCPMCCGETFNNSESLKYHLLSMTDNLYCPGCSLRTYSVAALIQHLDCCGKEMEQEEQPRDTEINTNDLVAGDTDRDESDILMDDNDDGINDSFLATVNDEGIMIVGEGRTIQVDENGDIQVVGKAHSITEEQSLPLVNGDKDLMNDSEEPKEVNEASVMLEENSILNSKGEDAISSMSDTAELLNENTTLISMAQVDLKLDDMLTIKKESSQETENDQDSEIMYSCSTCGMSFTSVLEHIKEYHDGQEVVLEMAEQQMDELETTQSILPASEVTIEPPVSTSTSTVQTTAAPTKQRQSMNTLRTEECIDSDGRLYTRKVVQIERFWDRTPVTLSTTKAPMIEKFFSNVEGVKVRDKSVTVAPTRMYRCNQCLEQFAKLGDFRVHVCLQGNNRCDQCDQTFATAKALQTHAKVHENSDFPSQKIFLCTVCGTEFLTHKSLRLHSRMHAPVRARHVDAPEGTEEETFVCAECGTTLSESYRGAHMALHAGDSITCTVCNRKFDSAESLAMHAAVHMDVNASPSSSTATAVNDLVLAAVSSGVTNSQDPSEPEFISTGTTMATSTATSTPADSAEVQSQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHSCEVCGKKFRVSYCLTLHMRTHTGVRPYECQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCNICGASYGRAFALKDHVKQHERENVVMPPEPAREEEVQVDSFLLQDDEDEEELIVPSPPPNCDPIQTELDDEFKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00693232;
- 90% Identity
- iTF_00693232;
- 80% Identity
- -