Ekie000729.1
Basic Information
- Insect
- Eupelmus kiefferi
- Gene Symbol
- -
- Assembly
- GCA_030522745.1
- Location
- JAPYZB010000239.1:6471-13724[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.001 0.25 13.9 2.5 1 23 59 81 59 81 0.96 2 29 1e-05 0.0026 20.1 2.7 1 23 87 109 87 109 0.98 3 29 4e-07 0.0001 24.6 0.1 1 23 115 137 115 137 0.98 4 29 0.0029 0.74 12.4 1.5 3 23 145 166 144 166 0.97 5 29 0.00041 0.1 15.1 5.5 1 23 171 193 171 193 0.97 6 29 2.8e-06 0.00071 21.9 1.3 1 23 202 224 202 224 0.98 7 29 2.1e-05 0.0052 19.2 0.9 1 23 230 252 230 252 0.97 8 29 0.00021 0.053 16.0 2.1 3 23 260 280 258 280 0.97 9 29 5.4e-06 0.0014 21.0 1.8 1 23 286 308 286 308 0.98 10 29 0.093 23 7.7 0.7 1 11 314 324 314 327 0.92 11 29 0.14 36 7.1 0.3 1 20 399 418 399 422 0.87 12 29 0.0028 0.7 12.5 5.4 1 23 427 449 427 449 0.97 13 29 2e-06 0.0005 22.4 3.9 1 23 469 491 469 491 0.97 14 29 0.0051 1.3 11.7 4.6 3 23 498 518 496 518 0.97 15 29 0.00097 0.24 13.9 0.1 1 23 523 545 523 545 0.98 16 29 7.9e-06 0.002 20.5 0.9 2 23 554 575 553 575 0.97 17 29 0.00047 0.12 14.9 0.3 3 23 617 637 615 637 0.96 18 29 2.6e-06 0.00066 22.0 1.8 1 23 643 665 643 665 0.96 19 29 1.4e-07 3.4e-05 26.0 0.3 1 23 671 693 671 693 0.98 20 29 5.4e-07 0.00013 24.2 0.9 1 23 699 721 699 721 0.98 21 29 0.0012 0.3 13.6 1.7 1 21 727 747 727 748 0.96 22 29 0.0074 1.9 11.1 0.3 2 23 900 922 900 922 0.95 23 29 0.0074 1.9 11.2 0.9 1 23 927 949 927 949 0.99 24 29 0.4 1e+02 5.7 4.8 1 23 955 978 955 978 0.95 25 29 9.4e-05 0.024 17.1 0.8 1 23 985 1008 985 1008 0.95 26 29 0.0034 0.86 12.2 2.0 1 23 1041 1063 1041 1063 0.98 27 29 0.00011 0.027 16.9 0.0 1 23 1067 1089 1067 1089 0.97 28 29 0.0004 0.1 15.1 1.8 3 23 1095 1115 1094 1115 0.96 29 29 5.5e-05 0.014 17.9 1.3 1 23 1121 1143 1121 1143 0.98
Sequence Information
- Coding Sequence
- ATGTATCATTACATCGTGATTATAacATCCTCGGGCACTGAAACAAAGAAAGTCAATTCGGATTCGATAGTATCCATAATTGATATAAATGCAGTGGAAACATTGGAATCATTGCCGATTGTCGATGCAAAAGATAAGCCTGTTGTGGACGACCAACAAGCCGTTGAACCtgGCTACCAGTGCCCGATTTGCACCAAGTGCTTCAAGGCCAAGCATCTGTACGAAGGCCACCTCATAGCTCACAGTGACGCTCGGCCACATCGCTGCGACGTTTGCTCCAAGTCTTTCAAACGTACCAGCACTTTGGCTGTACACCGACGCATCCACACGCGCGAGCGCAACTACATCTGCGACGTCTGCGGCCGAGCCTTCGTCCAAGCCTCCCAGCTCGCCACCCATCAACGCCGGCACttcgaaaaatattctaaattctGCCTGATCTGCAATAAGGGATTCTTTACTAATGCCGAATTACACGGCCATATGAACATGAAGCATGCGGCTAACCAGCACGTGTGCTCAGTTTGCCAGAAGTCGTTTCCCAATAATCATACGTTGATGCATCACGCCAAGAGCCACGATCCGAACTACGAGCGGGCCAAGCACCAGTGCGAGATCTGCGGCAAAACGTTCGCCTTCAAGAACTCGCTGATGGCGCACGTCAAATCGCACACCGGCGAGAACAGGTACGACTGCCAGCTGTGTGGCAAGTTCGTCAGGTCGAAAAGTTCGCTTCGAGATCACCTGCGATTACACGGCGGCGAGAAGAACCTGTTCTGCGATGTGTGTGGAAAAGCCTTCCATAAGAAAACGACTTTGGTGGTACACAAGAGGACGCACACCGGGGAGAAGCCATACGTTTGCGAGACGTGCGGGAAGGCGTTTACCCAGCACTCGACCCTCGTTATACACAAGCGGTATCATACGGGGCAGAGACCCTACCAGTGCACCGTCTGTAACAAGTCATTCGCCTTCACCGAGCGATATTATCCTCTGACGATCTTGGTCGACGAAACGAATCAACCCAAGACCGACATTCACGAGGCCGACAATTTCGTCATCAACTCTCCGCCTCCGATcacgaagaagaagcagcagatGCGTAAACAACTAGAGGAGGTAGCCGAGATCAAAGTCGAAGAGAACAGCGGTAACGATGGCGAGGCACTGCTCGATGATGATCTTCCTTTGGCTTTTTACTGTAAACCCTGCGGCACGTTCTTCGCCTCGCAAGAACAACTCGATTTGCACTCCGCCGAGCAGCATGCGCGCAGGCGCTTTGATTGTGCTCACTGCACCAGGAGCTGCCGCAGCGCTTTAAGCTTGCGCCGGCACATGAAACAACACAGGAACGAGATCTTAAGTGGTAGAAGAGACACTGAGGAGAAGTCACAACAGGAAGAGTTTGCGTGTGATACCTGCGGAAAAGTGTTTCGTCATAAGAGCAACTATCAGAAGCACTTGACGAGACATTCGGCAGGGGAGCTGGCCTGTAAACACTGTTCAAGAAAGTTCCGGCTTTTCCGAGATCTGACTCGCCATGAGAAAACACACTTCCTTCCGAGCTTTCAGTGTAAAGAGTGTGACTACGAGACTACCGTTCTTGCCGCTCTAAGCATCCACATGTTGAGGCACACGAACAAAGCAGACCTGCCGTTGAAGTGTAATGAGTGCGACAAAAGGTTCAGAAAGGCGACGGAACTGCAAGAACACTATAACATTCACTCTGGTGAGAAGCCGTTCGCCTGCCAGGCCTGCAACGACGCGTTCTTCCTGAGGCGACAGCTGTCTGCTCATTGCAGAAGGCTGCATCCAGAATTAAAAGCCGAGAAAGTTACCAGTACTGCGTGTGATATCTGTGGTAGGGTTCTGGCCACGAAGCGCTCGTTGTTCAGACATAAGGAGAGTCACAATCCGACCAAGCTTTATCTTTGCGATTACTGCGGCAAAAGTCTTAGCTCGGCGGAACATTTAAAGAAGCACAGAAGAATACATACCGGTGAAAAGCCGTACGTTTGTGACATGTGCGGTAAAGGATTCACCGACTCGGAGAACCTGAGGATGCATCGCAGGGTACACACGGGCGAGAAGCCGTATAAGTGCGATCAGTGTCCTAAGGCCTTCAGTCAGAGATCCACGCTTACGATACATAGAAGAGGACACACGGGAGAGCGTCCGTACGTCTGCCAGATCTGCCACAGGGGATTCTCGTGCCAAGGCAACCTCACTGCCCACCAGAAGTCTAATTGTTTAGGCGGCTTCCATAAACCGCGTAGCCCTATTTCTACTGTTTTTGAACCTCCCGCCTACTCCGCAAGCTACCTAATTTACCACCAAAATGGTACCACCAATGGTCACAGCAACGACATCACCGAATCTTTAAACAGGTATTCAATACACCTTAGCAATGGCGAAGCCACCGTCAACGGTAACAGCGTTGATGCTGACGAGCAACCAACTAGACGCACCAGAAACAGTAGCAGCAAACGCAACGGCCACAGCAATGGCAATACCGATGAGTTCGTAAAGCCTAGCAGCAGTAAACGCTCTCGCGATGGCAACAAGCGCAACGGCCACAGCAATGGCAATACCGATGAGTTCGAAAAGCCTAGCAGCCATAAACGCAGCAAACGCAAGCGTCGCCGTCCCTCCTGGCTGAAGGACTCGGTCACCGATTTTGAGAAGGGCCTGCGCAACACCTGCCCCTTCTGCAACAAAGTCTTTGATAACGAGAAGCGCGTGGCCAACCACGTTCGCAACGTCCACAAGAAGCCTTTCTTTAAGTGCGATCTCTGCCGTCGGCAGTACGCCAGCAAGGATGTACTCGATGAACACCGCAGGAGCCACAATATCGAGTCGCACTTCCAGTGTGAAATCTGCCTCATGAAGTACAAGCGGCAGGAGACTCTTGAGTGTCACATGGTGCGCTGTCACAGCGACGTTGAAGCAAACTTTGTTTGCGAGCACTGCGGTAAGCAATACAAGCTTAAGCAGGATCTGCAGCTGCATATAAACGCGGTCCACATGTGCGAGTACCAAGTCTGTCGGTTCTGCGGCAAGCACGTTAAGAACGTCAAGGCGCACGAGTGGCATCATCAGAAGCGCGAAAAATCCGAGGTCTATCCGTGCAAGCTCTGCTATAAGAAATTCCTGAGCGAGTCCAAGCTGGAGAACCATCTTAAAAGACACGCGCAAAAGTACCCGTGCAATATCTGCGGCGAGAAGTTCGACGGACCCGGTCAGCTGATTAATCATCGGGTTAAACACAAGCCTGGGGAATCATGCCAGTTTTgcgacaaattttttaatacgaaaAGCAATTATTATCTGCACGTTCTGATGCATGCTAAAGTTAGACCATACCGATGTGACATGTGCCCGGAGGACTTTACGCAGAGGACGACTCTTATGAAACATAGGGAGAAGCACGGTAATAATCTGAAACCGTTGAAAATGATACCAATTGCCGATCTTGCCAGAAGTATACTGAAGAGCTACCAGCCTTAA
- Protein Sequence
- MYHYIVIITSSGTETKKVNSDSIVSIIDINAVETLESLPIVDAKDKPVVDDQQAVEPGYQCPICTKCFKAKHLYEGHLIAHSDARPHRCDVCSKSFKRTSTLAVHRRIHTRERNYICDVCGRAFVQASQLATHQRRHFEKYSKFCLICNKGFFTNAELHGHMNMKHAANQHVCSVCQKSFPNNHTLMHHAKSHDPNYERAKHQCEICGKTFAFKNSLMAHVKSHTGENRYDCQLCGKFVRSKSSLRDHLRLHGGEKNLFCDVCGKAFHKKTTLVVHKRTHTGEKPYVCETCGKAFTQHSTLVIHKRYHTGQRPYQCTVCNKSFAFTERYYPLTILVDETNQPKTDIHEADNFVINSPPPITKKKQQMRKQLEEVAEIKVEENSGNDGEALLDDDLPLAFYCKPCGTFFASQEQLDLHSAEQHARRRFDCAHCTRSCRSALSLRRHMKQHRNEILSGRRDTEEKSQQEEFACDTCGKVFRHKSNYQKHLTRHSAGELACKHCSRKFRLFRDLTRHEKTHFLPSFQCKECDYETTVLAALSIHMLRHTNKADLPLKCNECDKRFRKATELQEHYNIHSGEKPFACQACNDAFFLRRQLSAHCRRLHPELKAEKVTSTACDICGRVLATKRSLFRHKESHNPTKLYLCDYCGKSLSSAEHLKKHRRIHTGEKPYVCDMCGKGFTDSENLRMHRRVHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYVCQICHRGFSCQGNLTAHQKSNCLGGFHKPRSPISTVFEPPAYSASYLIYHQNGTTNGHSNDITESLNRYSIHLSNGEATVNGNSVDADEQPTRRTRNSSSKRNGHSNGNTDEFVKPSSSKRSRDGNKRNGHSNGNTDEFEKPSSHKRSKRKRRRPSWLKDSVTDFEKGLRNTCPFCNKVFDNEKRVANHVRNVHKKPFFKCDLCRRQYASKDVLDEHRRSHNIESHFQCEICLMKYKRQETLECHMVRCHSDVEANFVCEHCGKQYKLKQDLQLHINAVHMCEYQVCRFCGKHVKNVKAHEWHHQKREKSEVYPCKLCYKKFLSESKLENHLKRHAQKYPCNICGEKFDGPGQLINHRVKHKPGESCQFCDKFFNTKSNYYLHVLMHAKVRPYRCDMCPEDFTQRTTLMKHREKHGNNLKPLKMIPIADLARSILKSYQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -