Basic Information

Gene Symbol
-
Assembly
GCA_030522685.1
Location
JAPYZA010004408.1:1115-5550[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 7.6 1.6e+03 1.6 0.8 1 23 648 670 648 670 0.79
2 17 9.9 2.1e+03 1.3 0.9 1 17 676 692 676 697 0.74
3 17 0.65 1.4e+02 5.0 1.0 2 23 703 724 702 724 0.95
4 17 0.0015 0.31 13.3 1.6 3 23 733 754 732 754 0.97
5 17 0.0064 1.3 11.3 2.7 1 23 761 784 761 784 0.96
6 17 0.00038 0.079 15.2 1.1 1 23 790 813 790 813 0.94
7 17 3.8 7.9e+02 2.6 1.7 2 23 821 841 820 841 0.92
8 17 8.5e-07 0.00018 23.5 1.8 2 23 847 868 846 868 0.97
9 17 7.7e-06 0.0016 20.5 0.2 1 23 874 896 874 896 0.99
10 17 0.0013 0.26 13.5 2.8 2 23 908 930 907 930 0.95
11 17 0.0095 2 10.8 0.5 1 23 936 959 936 959 0.94
12 17 0.023 4.8 9.5 2.0 2 23 981 1003 980 1003 0.95
13 17 0.00016 0.034 16.3 1.3 2 23 1010 1032 1009 1032 0.96
14 17 4.8e-05 0.01 18.0 1.7 2 23 1040 1061 1039 1061 0.97
15 17 0.0029 0.6 12.4 2.2 1 23 1067 1090 1067 1090 0.95
16 17 0.48 1e+02 5.4 4.4 2 23 1097 1118 1096 1118 0.96
17 17 0.0016 0.33 13.2 3.4 1 23 1124 1146 1124 1146 0.99

Sequence Information

Coding Sequence
ATGAGTAGCACTAACAAATCTGAATCCATGAGTTCTGAGAGCCATGGGCCTAGTAGGAAGGTTACGAGGAGTACTGCAAAGGTATCGATTGTGAAAGACTCTGCCAAGAATTCTCCTGTTAAAAAGACTCTCGATGATTCCAGTGCTAACTCGGTTAGTACAAAGCCTAAAGTGGCTTTCAGTCCAGAAAAAAGCAAGCCAGGAAACAAGCCTACTGGCTCTAATGTACTAACAAGCACTCCTAAAAGTAACTTGAATGCGAGTAAACCACTTGTTGAAGAGTTACAAAAGTCACAGAGTAAGACAAACGTTGTGATCATTGAATGTTCAGCAATATTATCTTCACCAACTGTCAAGAAAACTTCAATAGTACCAGAAGAAATCAAGCAAAAGATGGATAAATATTGTCGAACTTGTGCAGGATTGAAAGTTCCATTAGTTGATATATTCAGTGAAAAAGGAGTTCAAATGAGATTAAGTCAACAAATACAACATTTGGAAGACATTGATAAAGATGATAGCTTATCAACTCAAATGTGCATGGATTGTATTTGTGATATGAGAATGAGTTacaaatttttcatgcaaataaaaaaagctgAAATGAAGTTGAAATCAATTTCTAATTCTCTCAGTTTACCTACAAATACAACTAAAGTACAAACTGAAACAAAATCTCTAACTTCAGTTGATTCATCAAAAGCAGATGAACCTAATAATGATTTTGATGATACAGATGAAAAAGACTTATTGGAagataataatagatttataaaaagttttagcGATGGCAACGAATCATTTGAAGAATTTGATCCTGATTATCCACATGATGCAAATGAAACTGAAATTGAAGAAACTCGGGAAAAATTTACAAGTTTAACAAATGAAAtcccaaaatcaaaaaaatatgcatATAAGTATGATGAGGCATTAAATGCATATATTAAAGTTGATCCAAGTAAAGTAACACAAACTAGTGAtgatcaaattattaataaagaaaatgatgCAGTTGAAAAAGAATCTATTCCTCCATCAAGTAGTCTTTCATCATCAAATCAATCATCTAAGATACCAAATATTCTAAAAAGGAAATTATCAAGTGAGAACACAAGTGATGAAAGTAGTGATAAAGTTAATAAAGGAGATGTTCAAAAGTggaatattgatttaaaagacataaaaataccaaaattaGATCTTCAAGATCCAGCTAAcataaaaacagaagaaaatgGAGTAATGTATGTCACGGCAAAAGGATCAAAACCTAATGAAATGCTAttgataaaagtgaaaaagatgGATAAATTAATGGATAAAAAAACAGATAAAGGAgtagagaagaaaaagaaggatACAAATTCAGTACACAAAATATATCCAAAATATGAAAGTAGTAAAACAGGAAGTGAAATTGATAAACAAATAGAACAGTACAAAAAGAAAAGAGTTCAGGTGTTAGGAGAAACAGCTAATGTATCagaattaaattcaaatgaaaacgCATCAGAAATTAGAGATACTGATGACACTtcaaatgatgaaaaaatttttgaacaagGAAATAGTGTAGAAATCAAAACTGAACAAAATGATGACACTGAAGTTCTTAAAAGTACTACTCCTTCAGCACAATCTGCAAATcaggaaaaattaaaacaacggTGGCAAGATATTAGAAAAAGGCATGAGACCATTTATCGAGATCTAGCAGAAGACTGCTTTGATAGATTGAAAactcttttaaaacaaaaagatgAATATATTCAAgactttgttaattatttaaaacagcgAAGAATAGTTGTCTCACGTTTAAAAGATGACGatataattacattatatgaaacaaaaaataatgtaattatagaaAGACCGGTACAAATTCCCCAAGAGCCAGAAGAAGAGTTAGATCCTTTTGAATATAGAGAAACTTTTCTGTGTGATTTTTGTGACAGTAGTTTTCCGAATAGAGAGATGGAACATGAACATGCAAAAATTCATGATGTCAAGTTAATGCACTACTGTGAAGATTGTAAGCAAGAATTTTTAACGCACAAGGCCAAACGTGCCCACAATATAACATGTGTACAAAAGTTAATGTGCAAATATTGTGATATGATATTAGAATCGAAAGGGAAGAAAAGACAACATGAACAAAAACATTGTGATGAAAAATATGGTCAGCTTTGTGATTTATGTGGTGAAAAATTCAAACATCAAGGTACTTTAGATCAACATGTGAAGTCTCGACACATGCAATtagaaaagatttataaatgTCCACAATGTTCAAAGAGATTTGCATTCAGGACCAAATTAACTTTCCATTTAAAATCTGTACACACTACTTGTAGAGCTTATTTGTGTGAAGATTGTGgatcagattttaaaaatcctGCAAGTTTAAGACATCACAGAATACGAAAGCATCAAActgtaaacaataaaaaagaatgcaAGGTCTGTAATAAAATGATTCCAGTCTATAGCATGTCTAaacacatgcatacacacaaATCATACAGCATTGAATGTCCTCATTGcgataaaatgtttaaaaatacgtCAACGTTAAAGCAACACGTGAGAATTCATGAAGATCAAAGACAATATAAATGTGAATTATGTGGTGTTGGATTTAATAGACGAGATGGTTTGAGATTGCATTTGAGAGTTCATGAGAAAACTGACAGCAGAGGATTAAAAGAATGCTCGTGTCAAGTTTGTGGTGAAAAGTTTCCAAATCATTCAATGCTTGTAATTCATAGAAACCGCACTCACAAAGATGGCAGAAATTATACTTGCCACATATGTAATAGATCCATGATTTCTACACGATCTCTAGAGTGGCATTTGGCAAATATTCACAACGAAACATTGCCTGGTATTTTGAGAGATGAAACTACTGTAGATGTTGAAACCAAGCGAGTCTCTTGTGTCCATTGTGAGAAAACATTCAAGACTGAAATGATCTTGAGAACACACATAAAAAATACACACGTAGAGAAAGAACCCATGAAATGCTTGGATTGTGATGAAACGTTCACATCTGAAGTTCGTTTGAAACATCACATGATGGTGCAGCACAATCGCTTAGAAGGAACTCTGACCTGTCCACATTGTCCTAAGAGATTTGTTAATCAGTTGAGACTAAAAACTCACATGATTTCTCACTCAGATGAAAGACCTCATACTTGTGACATCTGTGGGTTCatgttaaaaacgaaaatacaACTGATTAAGCATAAGCAAAACAGACATAGTAATGAAAGACCACTTCAATGTAAATATTGTACATGGAGATGTAAACAAGTCAGTGCTTTGGTTTGCCATGAAAGAACTCACACGAATGAAAGACCTTACAGTTGTAGTGTATGCaagcaaaaattcaaatatcttGGTGATAAAAACAAACACCAAAGACGTCATGAGATATTTGGTGGTACTGGATTTAAGAGAATTGTTACCGGAAGAAATACAGGGAATAAAGCTgctaaaaagaaagaagaagattCTACTGAACAAGAATCTGAGCAAGAATTTACTTATGATCAAGATCAATATGAAGAGTACCATGAGCATGCTGAAGAAGACATAGAAGAAGTTGATGAAAcacatttcattaaatttgaGGCTGCAGAAATACAAGCTGAAGGCTCTGAAGCATCTTTTGAACAGATGTATGTTGAAGATACTTCACAGGATACTAATGATACTAAAGTTGTAATGGGAATTGAAGAAACTACAGTTTACACTGAAGAAGTTACTGCCGACCATGCTGAATCCGAAATAATCGCAAACAATATTATAGATGAACATGTCTTACAACCAGGAACAGTAGTTCATCTTCAGCAAGAAGATGAAACAGGAAAAATTCAAGTAATACCAGTCATGTTATCCTTGCCAGATTTATCAGATGCTTCTTCTGAAGTTAATTTAGGGACTGCTTCTATAATGTACGATAACTAA
Protein Sequence
MSSTNKSESMSSESHGPSRKVTRSTAKVSIVKDSAKNSPVKKTLDDSSANSVSTKPKVAFSPEKSKPGNKPTGSNVLTSTPKSNLNASKPLVEELQKSQSKTNVVIIECSAILSSPTVKKTSIVPEEIKQKMDKYCRTCAGLKVPLVDIFSEKGVQMRLSQQIQHLEDIDKDDSLSTQMCMDCICDMRMSYKFFMQIKKAEMKLKSISNSLSLPTNTTKVQTETKSLTSVDSSKADEPNNDFDDTDEKDLLEDNNRFIKSFSDGNESFEEFDPDYPHDANETEIEETREKFTSLTNEIPKSKKYAYKYDEALNAYIKVDPSKVTQTSDDQIINKENDAVEKESIPPSSSLSSSNQSSKIPNILKRKLSSENTSDESSDKVNKGDVQKWNIDLKDIKIPKLDLQDPANIKTEENGVMYVTAKGSKPNEMLLIKVKKMDKLMDKKTDKGVEKKKKDTNSVHKIYPKYESSKTGSEIDKQIEQYKKKRVQVLGETANVSELNSNENASEIRDTDDTSNDEKIFEQGNSVEIKTEQNDDTEVLKSTTPSAQSANQEKLKQRWQDIRKRHETIYRDLAEDCFDRLKTLLKQKDEYIQDFVNYLKQRRIVVSRLKDDDIITLYETKNNVIIERPVQIPQEPEEELDPFEYRETFLCDFCDSSFPNREMEHEHAKIHDVKLMHYCEDCKQEFLTHKAKRAHNITCVQKLMCKYCDMILESKGKKRQHEQKHCDEKYGQLCDLCGEKFKHQGTLDQHVKSRHMQLEKIYKCPQCSKRFAFRTKLTFHLKSVHTTCRAYLCEDCGSDFKNPASLRHHRIRKHQTVNNKKECKVCNKMIPVYSMSKHMHTHKSYSIECPHCDKMFKNTSTLKQHVRIHEDQRQYKCELCGVGFNRRDGLRLHLRVHEKTDSRGLKECSCQVCGEKFPNHSMLVIHRNRTHKDGRNYTCHICNRSMISTRSLEWHLANIHNETLPGILRDETTVDVETKRVSCVHCEKTFKTEMILRTHIKNTHVEKEPMKCLDCDETFTSEVRLKHHMMVQHNRLEGTLTCPHCPKRFVNQLRLKTHMISHSDERPHTCDICGFMLKTKIQLIKHKQNRHSNERPLQCKYCTWRCKQVSALVCHERTHTNERPYSCSVCKQKFKYLGDKNKHQRRHEIFGGTGFKRIVTGRNTGNKAAKKKEEDSTEQESEQEFTYDQDQYEEYHEHAEEDIEEVDETHFIKFEAAEIQAEGSEASFEQMYVEDTSQDTNDTKVVMGIEETTVYTEEVTADHAESEIIANNIIDEHVLQPGTVVHLQQEDETGKIQVIPVMLSLPDLSDASSEVNLGTASIMYDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00690546;
90% Identity
iTF_00690546;
80% Identity
-