Basic Information

Gene Symbol
salm
Assembly
GCA_030522685.1
Location
JAPYZA010006265.1:2382-18594[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 7.4e-06 0.0015 20.5 0.9 1 23 442 464 442 464 0.98
2 9 1.5e-05 0.003 19.6 2.1 1 23 470 492 470 492 0.98
3 9 0.86 1.8e+02 4.6 1.8 3 23 936 956 935 956 0.92
4 9 6.3e-08 1.3e-05 27.0 0.6 1 23 962 984 962 984 0.97
5 9 0.0022 0.45 12.8 4.1 1 23 994 1016 994 1016 0.97
6 9 0.0031 0.64 12.3 1.9 2 23 1373 1394 1372 1394 0.97
7 9 0.022 4.7 9.6 1.0 1 14 1400 1413 1400 1414 0.94
8 9 1.5e-06 0.00031 22.7 2.1 3 23 1665 1685 1663 1685 0.96
9 9 1.1e-07 2.3e-05 26.3 0.8 1 23 1691 1713 1691 1713 0.98

Sequence Information

Coding Sequence
ATGCAGCTGATGCGCTGGAGCATAACCAGGAGGCTGGAGAGCCGGGGCGAGAAGCAGCGCCGCGACGCCAGGATCTGCCAGCCCGAGACCTCCGACTCTGCGAGGCTCTCCCACTCGCGCTGCTCCGGGGAAGACAATGACTCAGCTTCGGACGGCGAGgagagcggcggcggcggcggcggcggcgccggtGGCGCGCTCGGCGACGAGGCAGTCGACCTCAGCGGCGCTCGCTCCCAGCACGAGGACGACCTGCTGGACGAGCGCGAGGAGCTCGCCGCCGACGAGGACGACGTCGCCGACGACGAAGGCGCCGAGGAGCTGGCCGACGAGgcccagcaacagcagcagccgcgCAAGAAGCTCAGACAATCATCGGAAGCCGGGCCGGGCAGCGAGGAGCTCGACGAGGAGGGCTCGCGCAAGCGCATCCGGCTCTGCCAGGACGCCGAGAACAACAACAGCTTCGTCGAGGGAGGCCAGCCGGCCCCGTTCCCGCCCGCCGGCACTAGTCACGTCACCCTCGAGGCGCTCCAGAACACGAAGGTCGCCGTGGCCCAGTTCGCCGCGACGGCCCTGGCCGGCGGCGCCGACAGCGAGGCCGCCCTCCAGGAGCTCGCCGTGCTCCAGAGCACGCTCTACACGCTCCAGCACCAGCAGGTCTTCCAGCTCCAGCTGATCAgccagctgcagcagcagctctcgATAACGGCCCAGCAGGCGCCGGGCCTGGGCGCGGCGAGCGCCGAGGGCAGCCTCGCCGGGAAGTCCGAGCCCGGGGCCGGCTCCGACAGCAAGGAGGCCTCGCCCTCGCCGGGCCCGGCCTCCGCCTCCTCGGCGACGCCCCTCATCCATCCGAAGCCCCTGTCCTCGCTGACCTCGCCGGCGCACTCGCGGCCGCCGAGCCACCACCAGCTCCAGCAGCCCTCGCCCTCGTCGACGCCGGTGGCCCAGGAGCGGGCGGCCAGCGCCTCGCCCCTGGCGCCCATGGCGACGAGCCCGATCGCGAGCTCGGTCCAGCCGCTGGTCCAGCCCGCACCCCAGCCACAGCCGCCGTCGCACCAGGTGCCCGGGCTCTGCTCCATCAGCTCGTCGCTCGCCTCCTCGATCATCACGAACAACGATCCGATACCCCTGAACGAGCCCAACACCCTCGAGATGCTGCAGAAGCGCGCCCAGGAGGTGCTCGACAACGCCAGCCAGGGCCTGCTGGCCAACAACCTCGCCGACGAGCTGGCCTTCCGCGGCAGCGCCGGCAAGGGCTCGAGGCTCTCGCCGTACGACGGCAAGAGCGGCAGCGGCAGGAGCGAGCCCTTCTTCAAGCACCGCTGCCGCTACTGCGGCAAGGTCTTCGGCAGCGACTCGGCCCTGCAGATCCACATCAGGTCGCACACGGGCGAGCGGCCCTTCAAGTGCAACGTCTGCGGCAGCCGATTCACCACCAAGGGCAACCTCAAGGTCCACTTCCAGAGGCACCGCGACAAGTTCCCCCACGTCAAGATGAACCCGAACCCGGTGCCCGAGCACCTCGACAAGTACCATCCGCCCCTGATTCAGCAGCTGGCCGCCTGCGGTCAGCGGCCGCTCACCTCGCCGCCGCCTCCGCCACCGCCGACTCAGCCGGGCTCGATGCCCCCGCACACGTCGGCCGGACCTCCTGGTGGGCCGGTGCCACCGCCGCCTCCGACCTTCCACTCGGCAGCTGCCGCGGCGGCTGCGGCCGCGTTTTTACCCCCGCAGCCGCCGCTGCCCCTGGGCCTGGGGCTCCCGCCCGGCATGCCAGCTGCGGCAGCGGCGCTCTACAGGTCGCCCCTGCTGAACGCCGTCGCCGCGGCGGCGGTGCACCAGCGGCCCGACGAGCAGGACATGCCCGAGAACCTGAGCAAGCCCAGCGAGGCGACGCCGACGCACTCGCCGAGCCAGTCGCCCGGCGCCCACTCCAACTCACATCATTCCTTCAGCGAGCACTGCCAGAGCGGCAAGCAGGACGAGATCGTCAAGATGGAGCAGCGCGAGCACTCGCCCCTCAGGGACTTTCATcatcaccagcagcagcagcagcagcagcaacagcaacagcatcaACAGCAGCCGCCAAGGCCCAACAGCCGGGAGCAGCACGTGCCGGAGAGCATCACGCCGAAGCACGAGCCCGTCGACACTGACGAGCTCAACGACGAGGAGGCCGAGGAGTACGAGATGGACGCCAGGAGGTACATGAACTCGTCGCCCTCCGGGGCCGCGATCGCCGCCAGCCAGCAGATGTACGAGGACTGCAGCATGGAGAGCAAGGTGAGCGGCAGCCGGCTCGGCGAGGCCGACCTCGACCCCGAGGACGACATGGACGAGCAGCCGGAGAACCTCTCGAGCCGCGCCAACCCGGCCTCCATGCTCCAGCAGTCGATGCAGATCGGCGGCTACCACGCCTCCAGCACCGCCGGGCACGCCTCGCCCGCCAGCAGCAGCGCCAGCAGCGGCAGCCTCCAGACCTCCTTCGCCAACATTCTCTTCCCGGGACTGCCGGGCCACCCTCAGCTGGGGCCGCCACCCCAGCACCAGGCCGGCCCCGGCGGCCGGGAGCCCGCGAGCAGCACCCCCGGCAGCGCCGTTGGCGTCAACCTGGCCCAGCCCGGCGAGCTCATAGACCCGGCCCGCGACCCAGCCATCTACTCGAGCCTGCTGCCGAGGCCGGGCAGCAACGACAACTCCTGGGAGAGCCTGATCGAGATCACCAAGACCTCGGAGACGTCGAAGCTCCAGCAGCTCGTCGACAATATCGAGCACAAGCTGACCGACCCGAACCAGTGCATCATCTGCCAGCGCGTACTCTCCTGCAAGAGCGCCCTGCAGATGCACTACAGGACGCACACCGGCGAGCGGCCCTTCAAGTGCAAGATCTGCGGCCGGGCCTTCACCACCAAGGGCAACCTCAAGACACACATGGGCGTGCACAGGGCGAAGCCGCCGCTGAGGCTGCTCCACCAGTGCACCGTCTGCCATAAGAAGTTCGCCAACTCGTTCGTCCTCCAGCAGCACGTCAACCTCCACACGAACGACCCGACCGAGCTCACGCCCGAGCAGATCCGCGCCGCCGAGGTCCACGACTTCCCGCCCGCGGGCTACCCGGCCCACCCGCTCGCCGCCTTCCTGCCCCAGGGCTTTCCGCCCCTGCACCCGGCCGGCTTCCCGCTCGGCTTCCCGGCCACGGCCAGGCAGCACGCGCTCGAGAGACAGGCGGCACTGGACAACGACCTCGACACCAAAGAAGCGCTGCACCAGCAGCACCAGCACCTGCAGCAGCAGTTCCAGCAGCACCAGCGGGCGATGgccgcggccgcgcgcgccgaGAACGACGAGGTGGAGGACATCGAGGACGAGGAGGAGGATCGCCGCGGCGAGGACGACGAGAGGATGGCCGAGGCCGAGCAGCAGATGGCCAGGGAGAGCCGAGCCGGCAGCCTCGACGCGCCGGACGAGCACGATCTCAAGGAGCAGGAGCCCGACCAGGACCAGGACAACAAGGACAACGTCCTCGTGGCCGCTGGCTCGCCGCCCATCGTTCCGTCCTTCTCCACCTCGCTGGCGGCCCTCGAGAGCCAGGTGCGCACCATCACGACGATGGCCGTCAACAGCCAGCCCAagtcgccgccaccgccgccgccgcccccGCACTCGTTGCACCGCTACAACGGCAGCGAGAAGAGCAACAGCCCGCCAAATCCAGCCGCCTCGGCACCGCTCGACCTCACGCCACGGGCCTCCTCGACCCCGGCCTCGGTCAGCTCGGCGCCAATTTCACCGCCCAGccagcagcatcagcagcagcagcagcagcagcatcagccaCTGCAGCCACAGCCACAGCACAATCCACAGACGCATCATCCGCCGCATCCGTTCGGCATGTTCGCCGGGCTGCTGCAAGCCGTGTCGACGAGTTCGCCGGTCGGCGGCCCCGGCAACCCAGGCCAGCCCGTCAGCCTGAGCAACCCCGTGAGTCCGGGGCCCGGGATCGGCCCCCTCGCGTCGCTGACCACCTCCGCCGTGAGGGCTGCCACCTCGAGCTACAATCCCCTCGGCCTCGCTGTCGGCGGCTCGGCAGTGCGCGGCAACACCACGTGCAACATCTGCTACAAGACGTTCGCGTGCAACTCGGCGCTGGAGATTCATTACCGGAGCCACACGAAGGAGCGACCCTTCAAGTGTACCATCTGCGACCGGGGCTTCTCCACCAAGAGCGGCGCGGATGGGAAGCCAGTGAAAAAGTGCACGTGCGCGGAGCGCGCTAGGCGCAGCGCCCGCGAGAAGGCGCGCAGGAGACGCAGGGCCGAGGAGCGCCGGGGGCGGATAGACGGCTCGGGCTACTTTGCCGATCATCATCCAGGGGGGCGGGGGGCCGCCACGCCGACTACGTCGTCTGCCATGGGGGCCCCCCGCTTGGGCCCGTGCTTGGGGGATGACGCAGCGGCGCGCGGCAGCCGCCTGCCCCCGATGCCGATGATGAGCTGCGGTCCCACGTCGTCGACCTCCGCCCTCGGGCTGCTGGCCTCCGCTGACCCCGCCGTCTTCCTGGGCAACATGAAGCAGCACATGCTGACGCACAAGATCCGCGACATGCCGCACCATCTGTTCGGCGAAACGAAGCTTCCGGCCTCGAGCCAGCCTCAGCAGTCCCAGCAGCCGCCTCAGCAGCCGCTCTCGGGCTCCGGACCACCGCCGCCACAGTCACAGCAGCTTCTGCCTAGCAGTCAACCTATGCACGACCACATGCAGAGCAGCGAGCGCTCGAGGAGTCCGACCTCCTCGGCGGACGAGTCAAATTTACCGCCGTTGCCCCCACCGCCTCCGCCGCCGCCTCCGATGCCTGCGGTGGTCTCGCAGCAGTCCCAGCAGCCGGCCCAATCGCCCGTGTCGATGGACGGCCCGAAGAAGCTGGAGAACGAGCCGCTGCCCGCGCCGAAGAGGCCGCCCAGCATGCCCAGCAAGCACTTGTGCCAGGTTTGCAATAAGAATTTCTCCTCGTCCTCGGCGCTCCAGATCCACATGAGAACACACACCGGCGACAAGCCCTTCCAGTGCACCATCTGCCAGAAGGCCTTCACCACCAAGGGCAATCTCAAGGTACACATGGGAACACACATGTGGACCAACGGAGCATCGCGACGCGGCCGGCGAATGTCATTGGACATACCGTCGCTTCCAATCACGCCCAAGGACTCGGAGTTCCTGCAGCGCAGGCCGGATCTCTTCTATCCGTACCTACCCGCGCCCTTCCTTAACGGGGTGCCACAAAAGCTGAACGAGATCTCTGTAATTCAGGGTAGCAACGGCCTGCCGCTCCCGAGTCACCCGGTCAACGCCAACAAGTACGCCGGCCTCTTCGGCTCGGTGTACGCCGCAGCCGCTGGAGCTGGCTTCCCCGGCGCCAACCACCTCGACAAGCCCCAGTCGCTGAGCAACGGACCCCTGGGTCCCGCCGACATGCTCGGCCCGAAGTCCGCCGCTAACCTGTCGGCCGGCTCGCTGCTCTTCCAGTCGCCCAGAGCCTCCTCGCCGCCGTCGCCGGCCCACTCGCCGGGCACGCCCTCCTCGAACACCGGCAGCCAGAACTCGGCGAGCATGCCGCCCTGGAGCACCGAGGCCATGCGCCAGCACCACTACGAGCGCGAGGTCGTCGCCGCTGCAGCGGCTGCCGCGGCGGTGGCCGCTGCCCAGAGGGCCGACAGCGAGCCCGGATCACCGCCTAGACTGCCGCCCGCGCCGAGGGGCGAGGGCCTAGCCGCTTAG
Protein Sequence
MQLMRWSITRRLESRGEKQRRDARICQPETSDSARLSHSRCSGEDNDSASDGEESGGGGGGGAGGALGDEAVDLSGARSQHEDDLLDEREELAADEDDVADDEGAEELADEAQQQQQPRKKLRQSSEAGPGSEELDEEGSRKRIRLCQDAENNNSFVEGGQPAPFPPAGTSHVTLEALQNTKVAVAQFAATALAGGADSEAALQELAVLQSTLYTLQHQQVFQLQLISQLQQQLSITAQQAPGLGAASAEGSLAGKSEPGAGSDSKEASPSPGPASASSATPLIHPKPLSSLTSPAHSRPPSHHQLQQPSPSSTPVAQERAASASPLAPMATSPIASSVQPLVQPAPQPQPPSHQVPGLCSISSSLASSIITNNDPIPLNEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRGSAGKGSRLSPYDGKSGSGRSEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHRDKFPHVKMNPNPVPEHLDKYHPPLIQQLAACGQRPLTSPPPPPPPTQPGSMPPHTSAGPPGGPVPPPPPTFHSAAAAAAAAAFLPPQPPLPLGLGLPPGMPAAAAALYRSPLLNAVAAAAVHQRPDEQDMPENLSKPSEATPTHSPSQSPGAHSNSHHSFSEHCQSGKQDEIVKMEQREHSPLRDFHHHQQQQQQQQQQQHQQQPPRPNSREQHVPESITPKHEPVDTDELNDEEAEEYEMDARRYMNSSPSGAAIAASQQMYEDCSMESKVSGSRLGEADLDPEDDMDEQPENLSSRANPASMLQQSMQIGGYHASSTAGHASPASSSASSGSLQTSFANILFPGLPGHPQLGPPPQHQAGPGGREPASSTPGSAVGVNLAQPGELIDPARDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLTDPNQCIICQRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRLLHQCTVCHKKFANSFVLQQHVNLHTNDPTELTPEQIRAAEVHDFPPAGYPAHPLAAFLPQGFPPLHPAGFPLGFPATARQHALERQAALDNDLDTKEALHQQHQHLQQQFQQHQRAMAAAARAENDEVEDIEDEEEDRRGEDDERMAEAEQQMARESRAGSLDAPDEHDLKEQEPDQDQDNKDNVLVAAGSPPIVPSFSTSLAALESQVRTITTMAVNSQPKSPPPPPPPPHSLHRYNGSEKSNSPPNPAASAPLDLTPRASSTPASVSSAPISPPSQQHQQQQQQQHQPLQPQPQHNPQTHHPPHPFGMFAGLLQAVSTSSPVGGPGNPGQPVSLSNPVSPGPGIGPLASLTTSAVRAATSSYNPLGLAVGGSAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCTICDRGFSTKSGADGKPVKKCTCAERARRSAREKARRRRRAEERRGRIDGSGYFADHHPGGRGAATPTTSSAMGAPRLGPCLGDDAAARGSRLPPMPMMSCGPTSSTSALGLLASADPAVFLGNMKQHMLTHKIRDMPHHLFGETKLPASSQPQQSQQPPQQPLSGSGPPPPQSQQLLPSSQPMHDHMQSSERSRSPTSSADESNLPPLPPPPPPPPPMPAVVSQQSQQPAQSPVSMDGPKKLENEPLPAPKRPPSMPSKHLCQVCNKNFSSSSALQIHMRTHTGDKPFQCTICQKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLDIPSLPITPKDSEFLQRRPDLFYPYLPAPFLNGVPQKLNEISVIQGSNGLPLPSHPVNANKYAGLFGSVYAAAAGAGFPGANHLDKPQSLSNGPLGPADMLGPKSAANLSAGSLLFQSPRASSPPSPAHSPGTPSSNTGSQNSASMPPWSTEAMRQHHYEREVVAAAAAAAAVAAAQRADSEPGSPPRLPPAPRGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00690538;
90% Identity
iTF_00690538;
80% Identity
-