Basic Information

Gene Symbol
-
Assembly
GCA_030522685.1
Location
JAPYZA010003409.1:13076-17395[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 3.9e-06 0.00081 21.4 1.4 1 23 147 169 147 169 0.98
2 15 8.4e-05 0.017 17.2 0.2 3 23 177 197 176 197 0.99
3 15 0.0004 0.084 15.1 0.1 1 23 284 306 284 306 0.98
4 15 0.0035 0.73 12.1 0.2 1 23 312 335 312 335 0.97
5 15 0.00017 0.035 16.3 1.8 1 23 362 384 362 384 0.97
6 15 2.3 4.7e+02 3.3 0.0 1 23 399 421 399 421 0.86
7 15 0.058 12 8.3 0.3 2 23 429 451 429 451 0.95
8 15 0.11 24 7.4 1.7 5 19 462 476 459 480 0.90
9 15 0.00025 0.053 15.7 3.5 3 23 488 508 486 508 0.97
10 15 0.018 3.8 9.9 0.1 3 23 515 535 514 535 0.97
11 15 1.1e-05 0.0022 20.0 0.4 1 23 544 566 544 566 0.98
12 15 0.0046 0.96 11.7 0.2 3 23 574 594 572 594 0.97
13 15 0.0041 0.85 11.9 0.2 3 23 602 622 600 623 0.94
14 15 0.019 3.9 9.8 0.0 1 23 637 659 637 659 0.95
15 15 0.033 6.9 9.0 0.1 1 20 1090 1109 1090 1112 0.93

Sequence Information

Coding Sequence
ATGGATGTCGGTGGGGATTTGACCCTGCAATGGGTGGAAGAAGTAGGAAACGTCATTCACGAGGAAGTAATATGTGGTCTCGAAGCAGAACTAGATGCTCCCGTGGAAGAGGTAGTGGGAGCATGCGAAGAAGTCACTGTAGAAGAGACAGTGGAATCTGTTCCAGAGGATTCTACTACTATAGCAGATACAGAAATTCTAATGGTTCCACAATCAAGTGATATGGAATCGATATATATAGTTCCACAGGACCAGGGCCATGATTATCTTAATATTCAAGTCACTGAGGAAGTGATAACTGATAATTGGGATAGATCTGGTCCAGATGACGGaatggAGATACCAGAAACAAAAGTTTCACAtgataatttattagaatatgaTGATATGGAAATACCCTTGCCAATTGATCAAGATTCTTACACAAATACACGACCTTATCCATGTGACTTCTGTAGTAAAAGGTTTAGGAAAAAAGCAAACCTCATGAATCATATGGTAACCCATCAAACAGAGCGCCCTCATGGCTGCAATTTATGCGGTGCTCGATATGTACGGAAGTCTGATTTAATGAACCATCTGAAAATTCATGCATATGCTCCAACACGAGATGGTTTAGAAGATGATTTAGAAGATCCACTAGCAACGGAAGAGGAAGAAAATCATCCTGTAAAAGGACGTCGTAAAAAAGTACAGGCTAATGTTCCTAGAAAACGTAAGGCACCTCCTGCAGGCAATAAACGAAGTATCGATGAGGGACCTAAATTGGATATGAGCAAGTGGACAGATCAGTTGACATCTAATGAGCAACATATACCTCGCTGGCCAGTTACTGATTCTTCAAAGCCATACGTGTGCCAGTTTTGTGGAGTAGCTTTTGCAAGAGAGAAAGCTCTTGCGTCTCACTCTCGAATTCATGGTGGTGATAGTCCATTTGAGTGTACGTCTTGTGGTGAAATGTTTTGGGATGTTAATACACTTCAAGAACATATGCGAGTCAAGCATAACATTGGCATAGGTCAATCTGATCAAGAAGAAGTAGAAAATGAGTCTAATTATGCCGGTGATGAAAGGTTTGGAGAATATTTTTGCGATACATGTGGAGTTCCTTTCCACAGATTAGATCTACTAAAAAGACATAGAAAAGTTCATATAAAACAAGAAGTAGATACAATAGAAGGTTCCAGTCAACACCATGTCTGTAATGTATGTGGTGAATGGTTCGAAGAAGCATTGGCTTTATTAGCTCATGCTGAATTGCATGCCAGtAGGTCACCTAGTCGCAGATGTCTACTATGTGGTGAAAGATGTCGCGATGATGCTGAACTCGCGGAACACGTACGAGAAATGCACGCGGAAGATGCGCCTCCAAACACATGTATTTTATGCGGAAAGACGTGTAAAGACAAACGCAGTTTGTTAAAACATTCATGGATTCATAATACTGATAAGACATTTGGCTGCACTAAGTGTGGAAAACGTTTTCACAGTAAAGCTAGATTGCGAAGacacATGGTGTCGCATCGCAATAAAATGGTAGCTTGCGACGAATGCGGCGAAGAGTTCCCTGATGGCCGTGCTTTGGTGAGTCATCGCCATTCGCACAACAAGGACTTAGGTGGACGTACTTTTCCGTGTCGCGAATGCGGCAAGACTTTCGGTAGTCGCAGCTCTCAACaaatacatatacgtatacacactgGTGAGAGGCCGTACGGCTGTCGGTTTTGTTGGAAAGCCTTTGCTGATGGGGGAACTCTTAGGAAGCATGAAAGGATACATACGGGAGAGAAGCCTTACGGTTGTGCCATATGTCCTCGTGCTTTCAATCAAAGaGTCGTGCTACGTGAACATGTAAGGGCGCATCATTCTGGTCCCGATCCCAAGTGTCATAACAGTCTCACGCCTTATATGTGCAAGGTCTGTGGTGACACGTTACCAACCTCGGACGAGCTTGTTGCTCACATAGTTGCTCACTGCGATGAGAACACGGCGATGCGTCGACAACCACAGTCTGGTCCTAGAAAATATAAACGACGACGTAAACTGAAACACGAAACTGCGGCCCTCACATCTCGCTTGAATGAATCCTTTGATCTTCTTGATGGTCCTTCGGACTCGGACGAGAACACGAAGCGCAAACTTGGCAAGAAAACAAAGCAGCATCGCACTAATGTAGAGGAGGGCTATCAAAATGTCCTCAAAAGTTTCGAGAGCTCGCTGCAGAACATCAACTCGATCGTCAGCAACTCTAAGACGTATCCAGCAAAAACGAAAGCtactaaaaagaaattaaagaaagaCGACAAGAAAGGTGGTGGAGTTGCAAGCAGTAGTGCTGAAGCTCCCACCTCTAATCATCCAGGCAGACCAAAGATGATCCATACACAGAAGACGCGAGTACCTGTGGAAATGGGTACAGATGGAGTAAAGAAAGGCCAAAAAACGAAAACGATGGTCACCAGAACGCCTAAGGTCATGCCAAACGAGCAACAGCCACAGCAGCAACAACACAGGCCTGCAGGTGTAGCTCCCGGCGGTGAGAGGAATAGACCACGTACCAAGAACGTTAGCTATCATGTGGAAGGCCGGCAACAATTCATACCTGCTACGTTTTCCAAGCCAAAGGAAGATGAAATTAACGTTTCGGTATCGACAGATACGCCTAATATCGAAATGGTCAATATTAAAGTCGAGCCTGGTCTTCAAAAGCTCGCGCCTACACAAAATCATACGACTAATAATAACGGTGATATTCTTGAATTTAAGCAGGAAAGACTTGAGAAGGCAGAAAAGCCCACACCGAAAAAACGAGGTCCTGTTAAGAGGGCAAAGAGGAGGCAAGCCGCCGCAACAAGGAGGCCCAAAGAAAAACCTACGCCAGTTGCTCCTGCGATATCCAGTGATAACCTCGAAGAAATACTATCGGAAGAGCAAGTAGAGCAATTGCAGCTGCAGCCGCAAGAACCTCAAGACGTACAGCCAACTCAACTGTTTGAGTCCGTGGTCGATGGCAACAATCTCGAGGTTGCTTTTGAGGCGAATATTGTCTCTGAGCAGGACGATATGGTACAAGAGTCGATACTTCCTGATCTGGACAAGGTCAATCATGTGGAAGAGATCTGCTCAGCCAGTGACGTCAGTGCTGGTAACGTTAAGCTAAGTGTCAAAGTCGAGTCGGCGCCTGACAGCATGCTTGACGTTCATAGCTTAATCGGCTCAGTCGAGGAGTCGGTGCCCGAGACTATCATACCCGATACTGTAGAGTACACTTGCGAGATGTGCGCACAGGTGTTCGAATCGCGTCGAGAGCTATTGCTTCATGTGCCCATACATATTTGA
Protein Sequence
MDVGGDLTLQWVEEVGNVIHEEVICGLEAELDAPVEEVVGACEEVTVEETVESVPEDSTTIADTEILMVPQSSDMESIYIVPQDQGHDYLNIQVTEEVITDNWDRSGPDDGMEIPETKVSHDNLLEYDDMEIPLPIDQDSYTNTRPYPCDFCSKRFRKKANLMNHMVTHQTERPHGCNLCGARYVRKSDLMNHLKIHAYAPTRDGLEDDLEDPLATEEEENHPVKGRRKKVQANVPRKRKAPPAGNKRSIDEGPKLDMSKWTDQLTSNEQHIPRWPVTDSSKPYVCQFCGVAFAREKALASHSRIHGGDSPFECTSCGEMFWDVNTLQEHMRVKHNIGIGQSDQEEVENESNYAGDERFGEYFCDTCGVPFHRLDLLKRHRKVHIKQEVDTIEGSSQHHVCNVCGEWFEEALALLAHAELHASRSPSRRCLLCGERCRDDAELAEHVREMHAEDAPPNTCILCGKTCKDKRSLLKHSWIHNTDKTFGCTKCGKRFHSKARLRRHMVSHRNKMVACDECGEEFPDGRALVSHRHSHNKDLGGRTFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYGCAICPRAFNQRVVLREHVRAHHSGPDPKCHNSLTPYMCKVCGDTLPTSDELVAHIVAHCDENTAMRRQPQSGPRKYKRRRKLKHETAALTSRLNESFDLLDGPSDSDENTKRKLGKKTKQHRTNVEEGYQNVLKSFESSLQNINSIVSNSKTYPAKTKATKKKLKKDDKKGGGVASSSAEAPTSNHPGRPKMIHTQKTRVPVEMGTDGVKKGQKTKTMVTRTPKVMPNEQQPQQQQHRPAGVAPGGERNRPRTKNVSYHVEGRQQFIPATFSKPKEDEINVSVSTDTPNIEMVNIKVEPGLQKLAPTQNHTTNNNGDILEFKQERLEKAEKPTPKKRGPVKRAKRRQAAATRRPKEKPTPVAPAISSDNLEEILSEEQVEQLQLQPQEPQDVQPTQLFESVVDGNNLEVAFEANIVSEQDDMVQESILPDLDKVNHVEEICSASDVSAGNVKLSVKVESAPDSMLDVHSLIGSVEESVPETIIPDTVEYTCEMCAQVFESRRELLLHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01219230;
90% Identity
iTF_00692321;
80% Identity
-