Basic Information

Gene Symbol
SMARCC2
Assembly
GCA_030522685.1
Location
JAPYZA010001105.1:23472-28792[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.1e-15 1.2e-11 46.3 0.2 3 44 632 673 630 675 0.95

Sequence Information

Coding Sequence
ATGCTGTCGCTCGGCCCCAAGAAGGACGGCGGACCGAATCTCAAGTTCTTCGACTCCTCGGAGGTGCTGGCCCAGCTCGACTCGGTCAAGCAGTGGCTGCTCAAGAACGCCAAGAAGTATATACAGACGGATTTACCAACCAACAAAAGTTTATCTTCTTTGGTCGTACaaattcttcagtttcaagagGACAATCTTGGAAAAAATGTTACTAAACCTCCTATGACCAGGATTCCTatGAAAtgctttttagattttaaaccAGGAGGTGGATTAtgtcaaattttattaacagCTTTTAGGTTTAAACAAGAGCAAGGATGGCGAAGATTCGATTTTCCTGTAGGAAAGTCTGGTTCTCGGATGGACAGAATGGTGGAAATGCTTGTTGCGATAGAGCGAGCATTAATTCAAAGTCGATGCCTAACTGTACCAAATGTGTTTGTGAGGTCTGATGTTGATAAGGCTACAGCaacaaaagtaaaagaattaattcgTCGTCATCAAGGAACTATAGTAGAAAATGAAGATGATGCTACTCACATAATTTATCCTCCAGCTGATCCTTTAGAAGAAGAATATGCAAGGCCATGCTTTCGACGAGATCGTTCTGTATTATTGCACTGGTATTATTTCCCAGATAGTTACGATTCGTGGGTGAATATTGATCTTCCATGGGATTATCCCGAAGCTGCCCTTGGAAACATTACTCCAAAgtCAACATATAAAGTTTCTGCAACATGGGCGCTAGATTTAGAACAATACAATGAATGGATGAATGAAGAAGATTATGAAGTAGATGATAGTGGACagaaaaaagttcataaataCAGGTTATCTGTTGAAGATCTAATGGCTCAACCAGCACCACCATCTGCTAAAAAGCAAAAGAGGAAGAGATCACCTACTCCACCACCAAAAATTGGTAAAAGAAAgagTGGGCGAGCTCCTGCCGGTGTGCAAGGTTTGTCAAATGCATCTTCAGCAGCTCCAAAAAAATCTCGCGGTGGCGGAGACGAAGAAGAAGATTTAACTCAGGGAATGGAGGATCCACCTGCGGAACCAAGAATAGTAGAAGTTGTAGCCTCGAATGCGAATACACCGAACTCGGGTCAAAATAGCACTTCGACGGGCGGCATAATTTCCGGGAGTAAAAAGCAAGACAATGAATTGCAACCGTTGAAGTCTGGAAATATGGCTGATCTCGATGAACCTACAGAAGgtgaTAAAAGTAATTCACAAGCTTCCCAAGATAGAGAAGAAAGAGATACAAGCAAAGAAAGGGGAGATGGCAGCAAAAGTGATGAACCTGAAGATAATGTTACAGAGCAGACTCATCATATTGTTGTTCCTAGTTATTCAGCGTGGTTTGATTATAATTCAATTCATACTATCGAAAAACGAGCCTTATCTGAATTTTTCAATGGCAAGAACAAATCAAAGACGCCGGAAATCTATTTAGCATATAGGAATTTTATGATTGACACCTACCGTCTAAATCCAACAGAGTACATTACGTCTACAGCCTGCAGacgcAACTTGGCTGGAGATGTTTGCGCGATAATGCGTGTACACGCCTTCCTTGAGCAGTGGGGTCTCATAAACTACCAGGTGGATGCGGAATCGAGACCAACGCCAATGGGTCCTCCGCCAACATCCCATTTCCATGTGCTATCGGATACACCGTCAGGTTTAGCTCCGGTCAACCCCAATCCACCGAAGACGCCTCAACCTCCAGCTGCAAAAACTCTTCTTGATCTCGAGAAGAAGCCCATTCTTACAGACGAGAAGCCTCCAGTGGCTGGAGCAATGGCCAACTTCGGCCTAAAGATCGATCAGTATTCGAAGAAACCTGCAGTTCTGAAGAACAAGCAGGCCGCGGGTGCTACGCGCGACTGGACGGAGCAGGAGACGCTATTATTGCTTGAAGCGTTAGAACTTCATAAGGACGACTGGAACAAGGTTTGCGAACATGTAGGCTCAAGAACCCAGGACGAATGCATCTTGCACTTCTTGAGGTTGCCCATTGAAGATCCGTATTTGGAAGAACCCGAGGGTTTGGGGCCGTTGGCTTACCAACCCATACCTTTCTCCAAGGCTGGCAATCCTGTTATGAGCACCGTAGCTTTTCTCGCGTCTGTGGTTGATCCTAGAGTAGCAGCAAGTGCAGCAAAAGCTGCAATGGAAGAATTTGCTGCTATCAAGGATCAAGTGCCTGCAGCGCTTTTGGACCaacatttaaggaatgtacaagCTAGTGCAAATTCGGATGgTAAATTTGACCCAGCTGCGGGACTGGCTCAGTCAGGTATTGCAGGCACCGGACCTCCAGAACCTACGGAAGAGTCCAGCAGCACACAAAACGCTTCGGGTCAGCCAACATCTTCATCTGCGACGTCGCCACAATCATCAGCTGCGACGCCACCCGAGGCCAAGAAAGATGAAGCAGCTGAAAAGCCCAAAGAAAGCACCAGTGGCACCAGTACCCCTGCCGCCCCAGAGAGCGGTGAGTCGTCGGAGACTGCAACAAAGAAAGAGCCGGAGACTACCGAGGGTGAAAGTGCGGAGCAGCAACCGCAACAGCAGTCGGAGCCTGAAAAGATGGAAGTGGACAATAAGGAAGGCGAGGAAGGCGAAGCTAAGTCGAAGACCGATGGCGAAGACAGTGAAGCCAAGGAAAAGAAGGATAAGGTTGTCAGAGATGCACAATTGCAgtccgcagcagcagcagctttaGCGGCCGCAGCAGTGAAAGCCAAGCATTTAGCTGCTgttgaagaaagaaaaattaaatctcTGGTAGCGTTATTGGTCGAAACCCAAATGAAGAAACTCGAGATCAAGCTGCGCCACTTTGAAGAGCTTGAAACTACGATGGAACGAGAACGTGAAGGCCTCGAGTACCAGAGACAGCAACTCATCACGGAGCGGCAACAGTTTCACCTTGAACAGCTCAAAGCAGCAGAGTTTCGGGCTCGTCAGCAGGCTCATCAACGGCTGGCTCaagagcagcagcaacaacagcaacagcaacaacagcagcagcaacaacagcaacaaaCTCCGAATCAACATCAGCCTCCGTGGCAGCCAGGCGGTAATCAGCAGCCCCAGCCGCCTACGCAGCAACAAGGGCAGCCGCCTAGTCCACAGGCACAGCCTCATACGCCTCCGCAGCAGGCGGCATAA
Protein Sequence
MLSLGPKKDGGPNLKFFDSSEVLAQLDSVKQWLLKNAKKYIQTDLPTNKSLSSLVVQILQFQEDNLGKNVTKPPMTRIPMKCFLDFKPGGGLCQILLTAFRFKQEQGWRRFDFPVGKSGSRMDRMVEMLVAIERALIQSRCLTVPNVFVRSDVDKATATKVKELIRRHQGTIVENEDDATHIIYPPADPLEEEYARPCFRRDRSVLLHWYYFPDSYDSWVNIDLPWDYPEAALGNITPKSTYKVSATWALDLEQYNEWMNEEDYEVDDSGQKKVHKYRLSVEDLMAQPAPPSAKKQKRKRSPTPPPKIGKRKSGRAPAGVQGLSNASSAAPKKSRGGGDEEEDLTQGMEDPPAEPRIVEVVASNANTPNSGQNSTSTGGIISGSKKQDNELQPLKSGNMADLDEPTEGDKSNSQASQDREERDTSKERGDGSKSDEPEDNVTEQTHHIVVPSYSAWFDYNSIHTIEKRALSEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYITSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLSDTPSGLAPVNPNPPKTPQPPAAKTLLDLEKKPILTDEKPPVAGAMANFGLKIDQYSKKPAVLKNKQAAGATRDWTEQETLLLLEALELHKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLEEPEGLGPLAYQPIPFSKAGNPVMSTVAFLASVVDPRVAASAAKAAMEEFAAIKDQVPAALLDQHLRNVQASANSDGKFDPAAGLAQSGIAGTGPPEPTEESSSTQNASGQPTSSSATSPQSSAATPPEAKKDEAAEKPKESTSGTSTPAAPESGESSETATKKEPETTEGESAEQQPQQQSEPEKMEVDNKEGEEGEAKSKTDGEDSEAKEKKDKVVRDAQLQSAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHQRLAQEQQQQQQQQQQQQQQQQQTPNQHQPPWQPGGNQQPQPPTQQQGQPPSPQAQPHTPPQQAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01468781;
90% Identity
iTF_01523963;
80% Identity
iTF_00690115;