Basic Information

Gene Symbol
SNAPC4
Assembly
GCA_030522685.1
Location
JAPYZA010001503.1:13145-15277[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 0.026 74 5.3 0.0 22 43 235 258 222 261 0.79
2 5 3e-10 8.6e-07 30.7 0.4 1 44 267 312 267 314 0.96
3 5 5.5e-08 0.00016 23.5 0.0 2 43 322 367 321 370 0.96
4 5 6.3e-13 1.8e-09 39.3 0.0 1 45 376 421 376 422 0.95
5 5 8.9e-11 2.5e-07 32.4 0.3 4 46 432 474 429 474 0.95

Sequence Information

Coding Sequence
ATGAGTGAAGAAGAGGACAATCAGTCTTTAATAGATGAAATTCAGGCCTTAGAAAATGTATTAGATCAGAAACGAACTTTAGATATTAATGATTATTCCAAGTCCAGtaaaacatcaaataaaaatgtattgggAAATGTGGAAACAAATCTCAAAGAGGAACAAAATGGAATTAATGAACCTATGGATGTGGATGAAGAAATTGTTAGTGATAATGATGAATATGCAAATTATAGTTGTGATAGTTTACAAGATTTATTTgaactcaataaaaaattaataggaTTATTAGAACAATCTAGAGAAAAAGTGGAATCTCTTTTAGAAGAATGTACAAAAAAGGAGCGGtacattgaaaaacaaatttctaaaaCTGCATCTTCTTGGCAGAGTAAAATAGTAAGCTTTAATGCCGGCATGCCTTATTTcaaggataaaaattattattcagccAAAAGAAATGAAGATACAgaagctaaaattaaaaatggtgAGTTACGATTGGCTGAACTTCAACGTATTCATCGTTGGAGTCAAATAGATAAAAGTAATTTGTTAAAAGCTATAAGGTATGAAGTCACATTAACTCTATTAAGAAAAGATGGACCTGATgaaatatatattgataattcCATCACTAAAACAAGTCAGCTACCAGTTGATGTCAAAAGAGCAATTGGATCACTAGGTTCTATGAAATTTGActggttaaaaatagctaatGATATTCCTGATAATAAACACACTGCAGAAGAATGTGAAGTTATGTGGAATGTTTTTTTGCATCctgatattaataaacaaagatGGACTTCAAgagaagataaaaatttaaatcgtaTAGTAGGAGAATATGAATTTGAAGACTGGGATGGTATTGCCAAAGAATTAAAGACAAATCGTAGTGGTTATCAGTGTTTTGTTAggtataatacaaataattggaaaaatttaatgaaaggtCAATCATGGTCACCAGTAGATGACAAAATGCTTACTGATCTTGTACAAAAGCTCAAAATTGGAGATTATATTCCATGGGGATATATTGCAAGTTGCATGGGTAATTGGACAAAACAACAGATATATTTTCGATGGACCTACAGTTTAGCTCATCATTTAAAGAAGGGAAGATTTTCAACAAAAGAAGATGAAACACTTCTATCTGCTGTGGAAAAATATGGACCAAACTTCAGCAAAATCTCTGCTTTAGAAATGACTAACAGGACAAATATACAACTAAAAGAACACTATCAGACACTGCAGGCAAGATGTAacgcagttaaaaaaatttggaatttacaAGAAGATGCCAGACTTATTGAACTCCAACAAAAGTATGGTTGTAATTgggcaaaaattataaaagaactGCCTGGTACTACAAGGATACAAGCTAGGCATCGTTATGCTACTCTTTTGCGTTTTCATCGAAAAGGTATTGGTATAGAAAATATTGATAGGACGGAAGTAGATCCATTGTTAGATCATACTACAGTGACTTACACCAGTAATTCTCCTTGGTCTGGTGCAGAATGTTTGGCCCTCAAGAACCGCTCACGATAA
Protein Sequence
MSEEEDNQSLIDEIQALENVLDQKRTLDINDYSKSSKTSNKNVLGNVETNLKEEQNGINEPMDVDEEIVSDNDEYANYSCDSLQDLFELNKKLIGLLEQSREKVESLLEECTKKERYIEKQISKTASSWQSKIVSFNAGMPYFKDKNYYSAKRNEDTEAKIKNGELRLAELQRIHRWSQIDKSNLLKAIRYEVTLTLLRKDGPDEIYIDNSITKTSQLPVDVKRAIGSLGSMKFDWLKIANDIPDNKHTAEECEVMWNVFLHPDINKQRWTSREDKNLNRIVGEYEFEDWDGIAKELKTNRSGYQCFVRYNTNNWKNLMKGQSWSPVDDKMLTDLVQKLKIGDYIPWGYIASCMGNWTKQQIYFRWTYSLAHHLKKGRFSTKEDETLLSAVEKYGPNFSKISALEMTNRTNIQLKEHYQTLQARCNAVKKIWNLQEDARLIELQQKYGCNWAKIIKELPGTTRIQARHRYATLLRFHRKGIGIENIDRTEVDPLLDHTTVTYTSNSPWSGAECLALKNRSR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-