Basic Information

Insect: Eumeta japonica
Gene Symbol: ush
Assembly: GCA_005406025.1
Location: BGZK01001334.1:44165-47347[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.088 20 7.6 0.0 1 20 150 169 150 171 0.90

2 9 2.3e-05 0.0051 18.9 2.3 1 23 211 233 211 233 0.99

3 9 0.019 4.2 9.7 1.5 2 20 270 288 270 290 0.93

4 9 0.033 7.5 9.0 3.3 2 21 541 560 540 561 0.95

5 9 0.016 3.6 10.0 0.1 3 20 588 605 586 607 0.91

6 9 0.13 30 7.1 0.1 2 23 644 665 643 665 0.96

7 9 0.0082 1.8 10.9 1.3 1 23 671 693 671 693 0.99

8 9 1.3 2.9e+02 4.0 0.7 1 23 748 771 748 771 0.95

9 9 0.41 92 5.5 0.4 3 20 823 840 822 842 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.088	20	7.6	0.0	1	20	150	169	150	171	0.90
2	9	2.3e-05	0.0051	18.9	2.3	1	23	211	233	211	233	0.99
3	9	0.019	4.2	9.7	1.5	2	20	270	288	270	290	0.93
4	9	0.033	7.5	9.0	3.3	2	21	541	560	540	561	0.95
5	9	0.016	3.6	10.0	0.1	3	20	588	605	586	607	0.91
6	9	0.13	30	7.1	0.1	2	23	644	665	643	665	0.96
7	9	0.0082	1.8	10.9	1.3	1	23	671	693	671	693	0.99
8	9	1.3	2.9e+02	4.0	0.7	1	23	748	771	748	771	0.95
9	9	0.41	92	5.5	0.4	3	20	823	840	822	842	0.92

Sequence Information

Coding Sequence: ATGTATGCCTCGACTCGCCCCGAGCCATCTGACAGACGGGCGGCCGATATGACGCGACCGAACGTGACGAAGTCGCTCTTATCAGCTTCATGTGAAGACGAGGAATGGAGAAACGAGAACGAAGCGATGACCGGAGAACCTCGCACGCCCAGCTCGGCGGGCGAGCGAGCTACGTCGAGCGGCGGCGCCTCGCCCGCGTCTACGGGCTCGCCCGCACCCGCCGCCGCCTCCCCCACTCCGCCGCGCTTACGCCTCAACACCAGCCTCGCGACCGATCCTGCACTCGCACCTACCGCGGCGCCACTAAAGCGCGAAGCTCCCACGCCATCACCGCCGCCTGCGCCCGCAGCGCCTCACGCGCCCACAGCAGCGCCACCTTCTGCACGAGACTACCTGGCGCTCAGTGCCGCTTTTCCAGGGCTATTCCCGACGGCTGGCGTACCGCCGTATATTTGCGTACCCTGCGGTATTCGTTATTCGTCGTTAAGCACCCTCGAAGCACATCGCACGTATTATTGCTCACACCGACGGCCCAAACCGCCCGCCGAAGCCAGCGACGCCCCTACCGATGCAGCCAACGATGAATCCAGTAGTGACACACCCGTCAAGACACCGCGAAGTGGTAAACAATACGTATGCACGCATTGCTCGTATAGCGCTGACCGCAAGGTCAGCCTCAATCGGCATATGCGTATGCATTCAACATCGCCGAACCCACCCGCAGTCGCTGCACCAACTGCGCATCCTGTGGCACATGCTCCTCACACCAACGGAGACACGGCCGAGACGCCGCCCGCTCAGGATCGATACTGCACTGACTGCGATATTCGCTTCAGTTCGACAAAAACTTACCGCGCTCATAAAACCCATTATTGTAGTACCCGCCAAATTGTGAAACAATTGGGTACAGGAAGTACTCGTGGCCCCTCCTCTGGCACATCCGGATCCGCACCCGCTTCTCCACGCGCCACTCCACCCTCACCAGCCAGCACCCAGCCTGTTCTCGCGCTGCCCACCAATCCCATCCTCATATTACCGTATTCGCTGATAACTGGTGCGAGCGTCCTGCCGCGCGCTATGTTACCCGACCCGGACGCACCTTGTTTTTTGTTGCCTAACGGTACGATTCAACCGATAAATCGAGCACTCGCCGCTGCTGCTGTCGCTCCCCTAGACGACAGAGAACCTGAAGTCCTAAAATCGGCAAACCGGCCCCGCGACATCGCTCGCGACGGCGTGAGCAGCGCGCCGCTCGACCTCAGCGTACGCCGCTCACCAGACGCGCCCGCTCCTCATGCGCGCGACGATAACGAAAAAGAAAACCGCCTGAGATCGACGACGCCTGAACAGATCGTATGCGCACCGTCGCTACCGGTGTCACCAGTAGCGCGCACGCCCTCGCCACGGCGCTCTGCATCACCTAGCACGGAAAGTTCGCCCAAACGACGTCGACGCGACTCTCGGGATCCTACTCCCAAACCGACGGCAACGCCCTCTCCGCCCGAAGAAAAACTTATTCCACATTTAACACCGGCGTTACTAGCGCCGAACCTAGCGCTGCGACTGGGCTGCGAAGGCGTGCCCCCAGCCCCACAAGTTCTCGTAAAACAGGGCGTATCTAAATGTAAAGAATGCAATATCGTTTTTTGCAAATATGAAAACTACTTGGTACACAAACGGCATTACTGCTCGAGCGGAACGCTGGAGGAGCGCGCCAGCCCCGCGCCGGAACCGGGCCCACGCCCCTACCGGCAACTCATCTGTTTCGCGTGCGGCATCAGATTCAATTCGCTAGACAATTTAGCGACACACCAGTCGTATTACTGCTCCAAACGCGAGACGCGTTCACCACGAGCCGTCGCCGCGACGGGACAGGGGGCTGCGGAGGCAGCGCGGCCAGCGTCCGGCGGCGGCTCCGACGGAGGCTGGAAGTGTCCGTGCTGTGACACCGTCTCTGCCACGGCTGCGGCTGCCCAGCGGCACATGGAGTCGCACGCCGGCGTAAAGGCGTTTCGTTGCACCATCTGCCGATACCGCGGCAACACGCTACGCGGGATGCGTACACACATCCGGATGCATTTTCCCAAGAAACCGGTCGATTTACagGAAGAAACCTACATAGCATGCGTCGTCGAAGACGAGGGTCGAGAAAGCACATCACCGAGTACCGGATCGAGCGCGGGCGCGTCCGTCCCGGTCGGCGCGGGGACaccggcgggcgcgggcgccgcggaCCGTGTCCATCGGTGCGTGTCCTGCGCGTATACGTCTACGTACCGCGGTAATATCGTTCGACATGCGCGTCTCGTGCACGGCGCAGACGAACCCGAACCAGACGAAACGGTCGAGGCGCCCccagcgccgccgcccgcgccccctcCGGTACCTGCGCCAGCGCACACTAATACTACACCCGATATAAAACGGGAGCCCGACGCCGACGAAGAGACTCCCGGCCCCAACTACTGCAAGGCGTGCGACATCTCCTTcaagtatataaatacttataaggCGCATAAGCAATTCTATTGCCCAGCGCATGCGCACGACCCACCCAACAACAACGTGCCTCCCGCCGCCGCTGCCACCCCCGCCACCCTTATGTGA
Protein Sequence: MYASTRPEPSDRRAADMTRPNVTKSLLSASCEDEEWRNENEAMTGEPRTPSSAGERATSSGGASPASTGSPAPAAASPTPPRLRLNTSLATDPALAPTAAPLKREAPTPSPPPAPAAPHAPTAAPPSARDYLALSAAFPGLFPTAGVPPYICVPCGIRYSSLSTLEAHRTYYCSHRRPKPPAEASDAPTDAANDESSSDTPVKTPRSGKQYVCTHCSYSADRKVSLNRHMRMHSTSPNPPAVAAPTAHPVAHAPHTNGDTAETPPAQDRYCTDCDIRFSSTKTYRAHKTHYCSTRQIVKQLGTGSTRGPSSGTSGSAPASPRATPPSPASTQPVLALPTNPILILPYSLITGASVLPRAMLPDPDAPCFLLPNGTIQPINRALAAAAVAPLDDREPEVLKSANRPRDIARDGVSSAPLDLSVRRSPDAPAPHARDDNEKENRLRSTTPEQIVCAPSLPVSPVARTPSPRRSASPSTESSPKRRRRDSRDPTPKPTATPSPPEEKLIPHLTPALLAPNLALRLGCEGVPPAPQVLVKQGVSKCKECNIVFCKYENYLVHKRHYCSSGTLEERASPAPEPGPRPYRQLICFACGIRFNSLDNLATHQSYYCSKRETRSPRAVAATGQGAAEAARPASGGGSDGGWKCPCCDTVSATAAAAQRHMESHAGVKAFRCTICRYRGNTLRGMRTHIRMHFPKKPVDLQEETYIACVVEDEGRESTSPSTGSSAGASVPVGAGTPAGAGAADRVHRCVSCAYTSTYRGNIVRHARLVHGADEPEPDETVEAPPAPPPAPPPVPAPAHTNTTPDIKREPDADEETPGPNYCKACDISFKYINTYKAHKQFYCPAHAHDPPNNNVPPAAAATPATLM*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00924159;
90% Identity: -
80% Identity: -