Ejap005327.1
Basic Information
- Insect
- Eumeta japonica
- Gene Symbol
- THAP3
- Assembly
- GCA_005406025.1
- Location
- BGZK01000058.1:105247-121040[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.32 73 5.9 1.2 1 23 367 389 367 389 0.96 2 11 0.001 0.23 13.7 6.0 1 23 396 418 396 419 0.94 3 11 0.071 16 7.9 2.5 1 23 423 445 423 445 0.97 4 11 0.0064 1.4 11.2 1.2 1 23 450 473 450 473 0.98 5 11 0.016 3.6 10.0 0.2 1 23 477 500 477 500 0.93 6 11 3.5 8e+02 2.6 0.2 3 21 514 532 513 537 0.88 7 11 1.4 3.2e+02 3.8 0.6 3 23 602 623 600 623 0.95 8 11 0.00093 0.21 13.9 0.9 2 23 639 660 638 660 0.94 9 11 2.2e-05 0.0049 19.0 1.0 1 23 666 688 666 688 0.99 10 11 2.8e-05 0.0064 18.6 3.8 1 23 695 717 695 717 0.97 11 11 4.3e-05 0.0096 18.1 4.1 1 23 723 746 723 746 0.95
Sequence Information
- Coding Sequence
- ATGCGGTGTTGCGTGCCTAACTGTAAAAATGATTCAAGGCATATATCCAAGTCGCAAGGAATAACATTTCACGTGTTTCCCAATGAACCGACTCTCCGATTGGCATGGCTGCAAGCTGTCGGCAAAGAAGACTGGCAGCCTAAGGAAAGAAGTGCTATTTGTTCTGAACATTTTCTCTGTGATGATTTGTATGAGACTAAAAGTGGATTGAGGAAGGTCAGGTCCGGTGCAGTGCCCATCATATTACAGGAAACTAGCAATTGTGATTACGGAGAGCCAGCGATACTTCAGgCATGCAGGATATGTTTGGCAATGGATGTCAAATTGTTTCCGATTCGAAAGTATAAACTGGAGCAAGCTTATGAACAAATCTTTGGAATGACgatagaaGACAATGACAAGCTACCGCAGAAGCTGTGTCCAGAATGCATCACACACTTAATCAGTTTCAAAATGTTCAGAAACAAAGGTTTGAGGGCACATTCCCTGTTGCTAGAGATATTGAAGAGGCAGGATTCTctTACATCGGCTAGTATTAAGACGATCAATCGAAACACCAACCGGCTGTGTTCAAATTTAgttgaaaaacatttcattccacaatattatgatttatcGATAGATGCAACAGACGATTCAGATGTtaaaatagagaaaatcaatGAAGTAGAACCCACTCTACATGAAGTTAATATAGAAGTAGATGTTGCTGTAAAAAATGAAGAGCTGTCAAATGTAAATCAGCTCTATTATGATGAAGACACTGCAAATTATTCTGATGATGATGGGGATGATCCCAAAGATGAGGATTATAAAGAAGATGATGtggtgaaaaatttgaaaacagtcCCTGAATTGGAAGAAGAGTGCGAAATCAAACCCAAAAGGAGGAAAAGTAGAAGGGACTTGccagaaaaaaaactgaaagtgaaaaaagtaaagaaagatCCTACCGAACCGAAAATAGATAGACGGCGAAGGCCTTTCTTGAACGATGacttaaatgaaacattatttacCATAACCGACTTAACTATGGAAGAGCAAGTAGCCGAAATCGAAAAAAGGCAGGAGTCTACAAATTTCAAGAATTCAAAGTACAAATGTATGAAGTGTTTCAAAGGATTCCTGGATGAAGACGCATACAATAGCCATTCATTGAGGCATGCGCCGGAATGCGGCGAGCACGAATGTGAGGTCTGCAGGACCCGGTTCAAGAACAGGCACGCGCTACGCAAACATATCACGGCGCACCACACCCAGAGGTTCAGCTGTAACCAGTGCCCGTACACCACAACGCACAGACAGACGGCGCGATTACACGAGAGGTGGCATCGCGGTACCAAATACCAGTGCCCGCACTGCGGGGACGAGTTTGTTAAGTTCACAACGTACATGGGTCACATCCGAATAAAACACCCTTCGGACTTTGTGTGCGCGCTGTGTGGGTACTCCTTCGTCAGCGAGAAGGGCATAGAGCTGCACAAGAAGTTGAAGCACCGGCTGGACACTCAACAGATACCGGCGGACGGTCCGTATTGCGAGCCGTGTGGAGTACGCTTCGTGTCGGCCGACGCGCACAAACGCCATCTGATGGTGTCAGCGCGGCACGCCGATAACGCCAGAACACCAAAAGAACCGAATGCGAAGCCAAAATCGCGCCGGAATCGGGAAAatggcggcgggggcggcggtgGGGGTGCAGTGCGCGAGCACAGAGCGCGCGCAAAAAAGCAACGCGACCCCAACGAGCCGCGCAAAGTATACCCCAGCCAGATGCGGAAGGCGCAAGGGCCCATCGACTGCGAGCAGTGCGGCATGCAGCTGGAGGACTCTCGCGCCTACCACGGCCACTTCCGCAGGATGCACCCAGACAAGAACCGGACACACTACCCGTCCATGCGCTCGCCCTGCATGTGCGAGATATGCGGCAGGGTGTTCCAAAGTTTCGCGCTTCTCAAAGACcacacgtacatacatacgGGCGAGAAGCCATTCAAATGCGAGCTGTGCCCTAAGAGTTTCCGCATGAAGCAGCGGCTGGTGGCGCACCGGCGCGTGCATGCGCAGGTGCGCGCCTCCTACTCCTGCGGCGTCTGCAGCAAGACCTTCTCCACGCACAGCAACAGGCAGCGGCATATGTTTATCCACACAGGGCTGAAGCCGTTCAAGTGCGAAATGTGTGGCAAGTGCTTCAAGCACGCGAGCGAGAAACGCGCTCACATCACCTACGTGCACCTCAAGAAGCCGTGGCCGAAGCGGCAGCGCGCCAAACGCCACGTCAGACCCTCCGAATATGTAAGCGCACATaGTGTTCACGAGTCGACCGCGGCGCCCGAGCTGCAGCACCCGGCGTGGCCCTGCCAAGACCCCAAAATCGATCTCAACCCGATGCTGGATGATAAGCCCATGTACTACAACCTCAAGATATGA
- Protein Sequence
- MRCCVPNCKNDSRHISKSQGITFHVFPNEPTLRLAWLQAVGKEDWQPKERSAICSEHFLCDDLYETKSGLRKVRSGAVPIILQETSNCDYGEPAILQACRICLAMDVKLFPIRKYKLEQAYEQIFGMTIEDNDKLPQKLCPECITHLISFKMFRNKGLRAHSLLLEILKRQDSLTSASIKTINRNTNRLCSNLVEKHFIPQYYDLSIDATDDSDVKIEKINEVEPTLHEVNIEVDVAVKNEELSNVNQLYYDEDTANYSDDDGDDPKDEDYKEDDVVKNLKTVPELEEECEIKPKRRKSRRDLPEKKLKVKKVKKDPTEPKIDRRRRPFLNDDLNETLFTITDLTMEEQVAEIEKRQESTNFKNSKYKCMKCFKGFLDEDAYNSHSLRHAPECGEHECEVCRTRFKNRHALRKHITAHHTQRFSCNQCPYTTTHRQTARLHERWHRGTKYQCPHCGDEFVKFTTYMGHIRIKHPSDFVCALCGYSFVSEKGIELHKKLKHRLDTQQIPADGPYCEPCGVRFVSADAHKRHLMVSARHADNARTPKEPNAKPKSRRNRENGGGGGGGGAVREHRARAKKQRDPNEPRKVYPSQMRKAQGPIDCEQCGMQLEDSRAYHGHFRRMHPDKNRTHYPSMRSPCMCEICGRVFQSFALLKDHTYIHTGEKPFKCELCPKSFRMKQRLVAHRRVHAQVRASYSCGVCSKTFSTHSNRQRHMFIHTGLKPFKCEMCGKCFKHASEKRAHITYVHLKKPWPKRQRAKRHVRPSEYVSAHSVHESTAAPELQHPAWPCQDPKIDLNPMLDDKPMYYNLKI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00689446;
- 90% Identity
- iTF_00689446;
- 80% Identity
- iTF_00689446;