Ejap026745.1
Basic Information
- Insect
- Eumeta japonica
- Gene Symbol
- -
- Assembly
- GCA_005406025.1
- Location
- BGZK01000553.1:309644-321264[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.28 63 6.0 3.5 1 23 239 261 239 261 0.95 2 16 1.3e-07 2.9e-05 26.0 1.0 2 23 351 372 350 372 0.97 3 16 0.027 6 9.3 0.7 1 23 379 402 379 402 0.92 4 16 0.0061 1.4 11.3 0.0 2 23 409 430 408 430 0.93 5 16 0.00018 0.041 16.1 0.9 1 23 536 558 536 558 0.98 6 16 5.2 1.2e+03 2.1 0.0 12 23 601 612 597 612 0.89 7 16 0.0024 0.54 12.5 0.2 1 23 619 641 619 641 0.97 8 16 0.00046 0.1 14.8 0.5 1 23 647 669 647 669 0.94 9 16 5 1.1e+03 2.1 4.5 1 23 675 698 675 698 0.90 10 16 0.036 8.2 8.8 1.6 1 23 736 757 736 757 0.95 11 16 0.022 4.9 9.5 1.2 2 23 837 859 837 859 0.94 12 16 0.00039 0.088 15.0 0.3 1 23 867 889 867 889 0.96 13 16 0.00017 0.039 16.1 1.2 1 23 895 917 895 917 0.97 14 16 0.42 93 5.5 1.6 2 23 924 945 923 945 0.93 15 16 7.7e-05 0.017 17.3 1.5 1 23 951 973 951 973 0.96 16 16 0.86 1.9e+02 4.5 2.1 1 23 979 1002 979 1002 0.87
Sequence Information
- Coding Sequence
- ATGGACCAATCGCTTGTAACATTCAACTCTCTAGACAAAATAGAGGAAGAGGATGAAATTTCTCTACTCCATATCGAAAATATAGAAGGTTTATCCAACGTGTGTCGAACATGTGCTGCAGTGTCCGAGTCCTTTGTACCAATATTTGATGGAGAAGGACTACACCACAACTTAGCAGATAAAATGCTTCAATACTTATCCATTaagGTTAGTGAATGTGATGAATTGTCCCGTGCCCTATGCGTGCCTTGCGCCGACGCGTTAGTCAAATGGCACAGCCACGTGCAGCGCTGCACCCGTGTCGACCGTTTGCTGCAGGATCGCCTCACTCGACTACACCAGCCACCCACTCCTCTTGCACAAAGCGAACAAACAAAAGAGGAAGTCAATGGACAACACACTGAAGATGAGGAGCATTCTGACTGGGATCAAAATGTTCACGTTTTACAACCCATAGTGAAAGTAATTCTACGTGAGTACTTCAGGATTATGAATAAGAATGAAGATTATCCTGAAGTGATGCTGGTATGCCAGCTCTGCGACCAACACATCGTGCCCTCCAACGCCACCGGTCTCGCACGCCACCTTCACGCGCACCACACACCACTCGCATCGCCTCTGCGCTCCTCTCTCGCCGACTTCGTGAAAGATAACATTGTGTTCGTGGAGGCTCTCGACTCCACGCCCGTGTCCGAGCGATCGAATGCGCCGCTATTCTGCTGTCCACGCTGTGACCACATTTTTTCTTCGGCTACGCGTTTAATGTTCCATTTGAACGTGCACGGTATGCCCTCCGACGGTGGCTCTGTGTGCGGATGCGCCGGCGTGGACTCGTCGTCGGTCGCGATGCTGATACACCTTCGACGACGGCACACGAACACATCCTCTACCCTCTCCGACTTATCTTGTCGTTCTTGCGCATTCATAGCGTCCGACCTTGACCGTCTTCGTGCTCACGTCACTACCGCACACCGCCCCGAGCAGCTCGATGACCCACCGGGCAGTCGCCTTGCGCGGATTTCTACTTCAAACGCCAAATATATCCCTACGCAGTGCCCTGACTGCGGAAAGACTTtctcaaataaatacaatatggcCAATCACCGGCGTTTGCACACGGGCGTGGGGCTGACATTTCACTGCACCTATTGCGACAAAAATTATCGAAGTGATGGTGCACGGGCGGCGCACGAACGCCTCGCACATGGCGGCTCATTACCGTGGCCATGTCCGTACTGTGGCGAAACGTTTGGTACTCGCGGCGCACGCGACGTGCACGCGCGCCTCCACACCGGGGAGCGGCCCTACGCGTGTGCACTCTGTGACAAGCGTGACCGCGCCGCCCTCTGTTACAGGCGCGACTCGCCGACGACCGAACGTGCCCTTATCGATAACTTGTACCGAGCTTTGGTCCAGTTAGAGAGACACGTCGCCGTCGAACATCACCCTCGCACAGAACGTTGCCGCTATCCCGACTTCACGGACGACAGCGACACGGACGATATGTTCCGCCCTCCGCACGATGAACTGACGCCGCTGCGAGAGCCGCGACAACGCTCCGACACCACAGATGCTATGCGACACGACGCCAACGGACGCGTGTACTACGCGTGCGGAGAATGTGGCAAGCGATTATCGTCACGGCATACTTATGTTGCGCATCGACGAATCCACACGGGCGAGCGTCCATGTGTGTGTGCCACGTGTGCGGCAAACAATTCCGCGCCAGTGCCGGCCTACGCCGCCACCTCGTCGAAACGCACGAGCGCCGACGACGCCTTGCCTGCAACCTGTGCCATAAGAAGCGGTTCGCTAGCGGTGCACGTGCGCACTCACAGCACAGCGGCCCCGACACACCCATGTGCGGAATGCGGTGCCCAGTTCAGGTTGCGGGCGGGGCTGGCACGCCACCGCCTGCGTCATTCAGGCGATCGGCCGCACGCGTGCGCATTGTGCCCTCGCACCTTCCGCCAACGCCACGAGCTAGTAGCGCACGCGGCGGTGCACTCGGGCTCGCGCTCGCACGTCTGCGCGCTGTGCGCTGCCGCCTTCCGCCACCGCCGCGCGCTCGTACACCACTGTAAACGCGCACATCCACACAACCTCTCCGCGAAGCCCGTGCGTCACAGCCCGGCGGCGGCGCAGGTgcgcggccgcgcgcgccccTCCCCGTGCCACCTTCTCAGCGTGCACGCCGACCGCCTCTTCCATTGCGATGAGTGCAACACCTACGTCGACCGCACCGACCTCATCAGGCATATGTCTTCACACGCCGTACAGTACGCTGCTGGGCCGTCGCCAGCGCCTGACGCCGCCCCCGCGCCGCGCTCCGACTTCTCCGATCGTAGCGACACGGACGAGGGTTTCGGGCCACTTCCGGACTCCGTATTCGAAGCTATTGAGGATTCGCAAGATGGCGTTCCGCCCTCCCACCCGCACTCCTCACCGCTTCCAACCGCTATGCCGGCTGCCGTTGAACACGGGAACCGGCAAGCCAAAAAGAAGCGCACGTGCGCCGTTTGCACCAAAACGTTCACGGCGGCCTCCTCTTATTTCTACCACGTCAAGCACGTGCACACGGATGGCGAAAGCAAACGGCACGAATGTGGCGTTTGCGGCCGGCGGTTCGGTACGCGCGCCTACCTAGCCGACCACACCACCGTGCACACGGGTGAACGCCGTTTCGCGTGTGACCGCTGCGGCAAGTTATTCCGCACCCGTGCTAGCCTCCACATCCACGCGCAGACACACGCCGAACGCAGGCCGTGGAAGTGCACCCGCTGTCCGCGTGCGTTCGCTTGTCGTCAGAAACTGGCACGACACGAAGTGCGACATGCGGCAGAGCGCGCGCATGCGTGCACCGCTTGCGGCCGCCGTTTCGCCATGCGTTACGACTTGCAGCGACACGAGCGCACACACGCCGCACCTCAACGACACGCGTGTGTGCGTTGCGGCGCCGTTTACGCACAACTACGATACCTGCGCGTGCACTGCAACAAGAAACACCCCGCTGACCCCGGCGCCCTGCCTCCCGCCGCCACTCACGCGACCGCGTCGTTGCCCACGCCAATACCTCACCGATGA
- Protein Sequence
- MDQSLVTFNSLDKIEEEDEISLLHIENIEGLSNVCRTCAAVSESFVPIFDGEGLHHNLADKMLQYLSIKVSECDELSRALCVPCADALVKWHSHVQRCTRVDRLLQDRLTRLHQPPTPLAQSEQTKEEVNGQHTEDEEHSDWDQNVHVLQPIVKVILREYFRIMNKNEDYPEVMLVCQLCDQHIVPSNATGLARHLHAHHTPLASPLRSSLADFVKDNIVFVEALDSTPVSERSNAPLFCCPRCDHIFSSATRLMFHLNVHGMPSDGGSVCGCAGVDSSSVAMLIHLRRRHTNTSSTLSDLSCRSCAFIASDLDRLRAHVTTAHRPEQLDDPPGSRLARISTSNAKYIPTQCPDCGKTFSNKYNMANHRRLHTGVGLTFHCTYCDKNYRSDGARAAHERLAHGGSLPWPCPYCGETFGTRGARDVHARLHTGERPYACALCDKRDRAALCYRRDSPTTERALIDNLYRALVQLERHVAVEHHPRTERCRYPDFTDDSDTDDMFRPPHDELTPLREPRQRSDTTDAMRHDANGRVYYACGECGKRLSSRHTYVAHRRIHTGERPCVCATCAANNSAPVPAYAATSSKRTSADDALPATCAIRSGSLAVHVRTHSTAAPTHPCAECGAQFRLRAGLARHRLRHSGDRPHACALCPRTFRQRHELVAHAAVHSGSRSHVCALCAAAFRHRRALVHHCKRAHPHNLSAKPVRHSPAAAQVRGRARPSPCHLLSVHADRLFHCDECNTYVDRTDLIRHMSSHAVQYAAGPSPAPDAAPAPRSDFSDRSDTDEGFGPLPDSVFEAIEDSQDGVPPSHPHSSPLPTAMPAAVEHGNRQAKKKRTCAVCTKTFTAASSYFYHVKHVHTDGESKRHECGVCGRRFGTRAYLADHTTVHTGERRFACDRCGKLFRTRASLHIHAQTHAERRPWKCTRCPRAFACRQKLARHEVRHAAERAHACTACGRRFAMRYDLQRHERTHAAPQRHACVRCGAVYAQLRYLRVHCNKKHPADPGALPPAATHATASLPTPIPHR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -