Ejap024494.1
Basic Information
- Insect
- Eumeta japonica
- Gene Symbol
- -
- Assembly
- GCA_005406025.1
- Location
- BGZK01000480.1:286037-299582[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.8 8.6e+02 2.5 4.3 1 23 192 214 192 214 0.82 2 11 0.45 1e+02 5.4 4.0 1 19 221 239 221 244 0.91 3 11 0.00033 0.075 15.2 0.9 1 23 275 298 275 298 0.96 4 11 0.0051 1.1 11.5 1.6 1 23 302 325 302 325 0.97 5 11 0.0075 1.7 11.0 0.8 3 21 339 357 338 362 0.91 6 11 0.0053 1.2 11.5 1.0 1 23 370 392 370 392 0.97 7 11 0.095 21 7.5 2.5 2 23 403 425 403 425 0.96 8 11 1.9e-06 0.00042 22.3 1.9 2 23 437 458 436 458 0.97 9 11 6.4e-06 0.0014 20.7 0.8 1 23 464 486 464 486 0.99 10 11 1.6e-07 3.7e-05 25.7 1.0 1 23 492 514 492 514 0.98 11 11 1.3e-06 0.00028 22.9 1.4 1 23 520 543 520 543 0.98
Sequence Information
- Coding Sequence
- atgcaagaCCTGTTGATATGCCGGATATGTTTAGCCACAAACGTGAAGATGTACAACATTAATTGCTATGATCTGAACAACTTCTATACTCTGGTTGTCGGCCGTGAGGTACCAGTAGATTTTATAGAgcatattaatactaaaaaaaaatcattgttagtCTCACAAAACCTCTCTGTGATAGACTATGCAATTgatatatctttaaataatacagaattgcctataaaatctgaaattgcAGAAGAAAGCTATGAGACCAAAAATGAGGTGCAAATTAACGATTATAACAATGATATAACGTTAGGCAGTGCCGAATATTATAAAGaagatttcattgaaaatgtcCCAAGTCCAGATTCTTCAAATAGTGACGATGAACCGCTCTCTTTGAGGGTGACAAGAAAAAAGGAGCAGCAGAtatctaaaaaagaaatcacaGCAAGTGTCAAGAGAAAGTTAACAAAGAGAAGGTTCTATGAAGATTTTGCCGATGTCATCATACTGAGCAAAGAACAACAGTTGAAGGAGGTGGAGAACAGAAAGAACAGTTTAAACTACTTAAATTCTCcttataaatgtaacaaatgctATAAGGGCTTTTTGGAGGACAtaccatttaaaaatcatatggcGAGGCATGAGGAGATTAGTGGTGAGTTCACATGTGAAATCTGCCAGATTAGGTGCGAAACAGAGAGAAAACTCCGTTCGCACTGCATCTCCACACACGAAAGGAGATATGCATGTAGAGAATGCAGTCACATCTCCAACACTTGCAACCAGGCCCGCGAACATGAGAAATGGCATAAAGGTCACACGTATTCATGCGAGATCTGTGGGCAGGTGTTCAGAAAGTCAACGACTCGTCTCACCCACGTGAGGCTGCGTCACCCGACGCAGCACGTGTGCGACGTCTGCGGGGACTCGTTCATCGGCTCCCACGGCCTGACCATGCACAAGAGGCGCACGCACAAGGACACGCCTgAGGAAACAGTGAACTCAGACGGTTACTGCGCCGACTGCGACTTCCGGTTCGCGTCCAAGCACGCGCTGGACAAGCACGTCAGTTCCTCCGCCAAGCACTCCGGACACAGCCAGTTTTGtCATAACTGCAGGATGTGCGGTGACGCGTACGAGACCGAAGAGACGTTGCGAGCGCACTACAAGACGCATGCGCCGGCGGGAGGAGCAGGGGGGACCGCCGAGTGCGATCAGTGCGGTGCGCAATTCTCCAACGCAAAGAAGTGCGCAGCCCACCACCGCCGCGTCCACCTCGGGCTGAAGTACGCGAACAACAAGAACATAGTATGCGAAATATGCGGGAAGAAATGCACCTCGAAAGCGACTCTGCAGTACCACCAGCGCACGCATACCGGGGAGAAGCCGTACCAGTGCAACGTTTGTCCTAAGAGGTTCAGCGTGCGGCAGCGGCTACAAATCCATGCGCGCACGCACACTGGAGAGCGCCCTTACCCGTGCCCGCACTGCCCCAAGGCCTTCCGCCACAAGCCGGCGCTCAACAGGCACGCCCGCGTGCACACGGGCGCGAAGCCGTATACATGTTCCTATTGCAAGAAAGCCTTCTCGCAATCCAACTCGATGAAGATCCACATTCAGACGGTGCACTTCAAACTGCCCCCGCCCTACAGGAGCAAGAAAGGGAAGGGGGACGATTGA
- Protein Sequence
- MQDLLICRICLATNVKMYNINCYDLNNFYTLVVGREVPVDFIEHINTKKKSLLVSQNLSVIDYAIDISLNNTELPIKSEIAEESYETKNEVQINDYNNDITLGSAEYYKEDFIENVPSPDSSNSDDEPLSLRVTRKKEQQISKKEITASVKRKLTKRRFYEDFADVIILSKEQQLKEVENRKNSLNYLNSPYKCNKCYKGFLEDIPFKNHMARHEEISGEFTCEICQIRCETERKLRSHCISTHERRYACRECSHISNTCNQAREHEKWHKGHTYSCEICGQVFRKSTTRLTHVRLRHPTQHVCDVCGDSFIGSHGLTMHKRRTHKDTPEETVNSDGYCADCDFRFASKHALDKHVSSSAKHSGHSQFCHNCRMCGDAYETEETLRAHYKTHAPAGGAGGTAECDQCGAQFSNAKKCAAHHRRVHLGLKYANNKNIVCEICGKKCTSKATLQYHQRTHTGEKPYQCNVCPKRFSVRQRLQIHARTHTGERPYPCPHCPKAFRHKPALNRHARVHTGAKPYTCSYCKKAFSQSNSMKIHIQTVHFKLPPPYRSKKGKGDD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -