Ejap005321.2
Basic Information
- Insect
- Eumeta japonica
- Gene Symbol
- ZEB2
- Assembly
- GCA_005406025.1
- Location
- BGZK01000058.1:37485-48674[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.1 2.4e+02 4.2 0.5 1 23 170 193 170 193 0.92 2 11 0.072 16 7.9 3.9 1 23 200 222 200 222 0.96 3 11 0.008 1.8 10.9 0.1 1 23 226 249 226 249 0.95 4 11 0.052 12 8.4 0.5 1 23 256 278 256 278 0.97 5 11 3.7e-06 0.00082 21.4 0.3 2 23 283 305 283 305 0.95 6 11 5.6e-05 0.013 17.7 0.1 1 20 311 330 311 333 0.96 7 11 0.00073 0.17 14.2 0.3 6 23 346 363 342 363 0.92 8 11 0.34 76 5.8 0.1 1 23 374 397 374 397 0.90 9 11 1.6e-05 0.0035 19.4 4.6 1 23 401 424 401 424 0.94 10 11 1.8e-05 0.0041 19.2 2.2 2 23 434 455 433 455 0.97 11 11 0.034 7.6 8.9 0.3 3 23 463 484 461 484 0.92
Sequence Information
- Coding Sequence
- ATGGatattgaaagtaataaagcattttgtatttgttgctTGCAAAACGACAGACCACTTCTGAATACAGAAAAATGCCGTTTTATTACGTACATAAAATCTCTTCTTACGAGCACTGAGcttGTATTTCCCATATTACTGGTATGTAATCAATGTCATGAATTCTTGAAGAAAATTGAGTCTTTTAGGATTCAAGTTactgcaaattttaatttcatgtctAATTTAATGTTAGAGGTAAatttagattttgatattcCATTATCGAGAATGAAAAGTGAAGATTGCCGTGGCAAtggatatgttaaaaataaaaaaaaagtcaaaaagaaattaaagaagcAAAAAATCATCATGGATCCCAATGTGACCAAGAAAGGCAATGTTAGATTAAGGAAACAAAAGTTATTGGATCCAGAGAAGATCAAAATGATTGTTATGTCGAAGGAGGAACTGCTGCTGGACAGGGAGAAAGAATTGAAGAGCGAGGCCTATTTGAAATTTCCTTACAAgtgtcaaaaatgtattatcgGTTTCGATTATGTTCAGACATTGAAAGACCATGAAGCCAGGAGGCATGATGTGAAAATCGGGCAGCATGTATGTGATGTGTGCGAATCTGTGTTCAAATCACAGCCATCTTACAACACGCACTGCCGAAGGCACCTGCTCAGaTTTGAGTGCGTGGCATGTGGGAAGCGCACTGTAGACAAGGACGCCATGCTGAAACACTATGGTACGGCACACGATCACCTCACCACCGCCTACACGTGTGAAGAGTGCGGGCTTGTAGCacaATCTTATCGCGCTTATCGTTACCATAGAGAAAAACATAGAGAGAAACCACAATGTGCAGATTGTGGGAAAACCTTCATTAACAAAAACAGCTTAAGGCTTCATATACTAAACATACACCAATGCGAGCGGACTTTTTCGTGTGGGATTTGCGGTAAAGTCTACAAGGGCAAAAGCGGCCTATCCCAACACATGTGGGCGCACGAGAGCACCAACGGCGAGGCGGCGTACTGCGCGCCGTGCGGCGTCCAGTTCAAGTCCGCCTACAACTACAGGAACCATCTGAAGACTCACTCGAAGCATCTCACCGATCACGATCTGATTTACCCATGCGGCGCGTGTGGGATGCGGTTCGCGAGCGCTCGCCGCCGCCGCGAGCACGTCGACCGCGAGCACACCGACACGCATGCGTGCAACATCTGTCACAAGACGTTCAAGAGCCGCGTGGGCCTGCAGCGCCATCGGCGCTTCGTACACGAGAAGCGCCGACCGCCGAGGAACAAGATGTGCCACCACTGCGGACGCGGATTCACGACGGCGGCCATCTTGCGCGCGCATATCCGAACACATACCGGTGAAAGACCATTAGCCTGTGGAAATTGCACCGCGACGTTTGCGCATTCAGCGGCGCTCTACACGCACAACAAACTGGTGCATGGGCAGAAGCGTCACAAAGAAAATTCGGAGCTTCAACATCCCGGAACGTTGTCGTCGCGAAATTGA
- Protein Sequence
- MDIESNKAFCICCLQNDRPLLNTEKCRFITYIKSLLTSTELVFPILLVCNQCHEFLKKIESFRIQVTANFNFMSNLMLEVNLDFDIPLSRMKSEDCRGNGYVKNKKKVKKKLKKQKIIMDPNVTKKGNVRLRKQKLLDPEKIKMIVMSKEELLLDREKELKSEAYLKFPYKCQKCIIGFDYVQTLKDHEARRHDVKIGQHVCDVCESVFKSQPSYNTHCRRHLLRFECVACGKRTVDKDAMLKHYGTAHDHLTTAYTCEECGLVAQSYRAYRYHREKHREKPQCADCGKTFINKNSLRLHILNIHQCERTFSCGICGKVYKGKSGLSQHMWAHESTNGEAAYCAPCGVQFKSAYNYRNHLKTHSKHLTDHDLIYPCGACGMRFASARRRREHVDREHTDTHACNICHKTFKSRVGLQRHRRFVHEKRRPPRNKMCHHCGRGFTTAAILRAHIRTHTGERPLACGNCTATFAHSAALYTHNKLVHGQKRHKENSELQHPGTLSSRN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -