Ejap010253.1
Basic Information
- Insect
- Eumeta japonica
- Gene Symbol
- -
- Assembly
- GCA_005406025.1
- Location
- BGZK01000139.1:546542-565376[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00034 0.076 15.2 0.2 2 23 136 157 135 157 0.93 2 11 0.00049 0.11 14.7 2.4 1 23 163 185 163 185 0.96 3 11 0.00015 0.035 16.3 0.3 1 23 279 301 279 301 0.98 4 11 10 2.2e+03 1.2 0.1 2 23 308 330 307 330 0.87 5 11 0.00051 0.12 14.7 0.0 3 23 381 402 379 402 0.90 6 11 0.0033 0.75 12.1 0.3 1 23 422 444 422 444 0.93 7 11 2.1e-06 0.00048 22.2 0.2 1 23 474 496 474 496 0.98 8 11 0.00052 0.12 14.6 0.2 1 23 502 524 502 524 0.97 9 11 0.0003 0.067 15.4 0.3 1 23 530 552 530 553 0.95 10 11 0.026 5.9 9.3 1.4 1 23 567 589 567 589 0.95 11 11 0.0023 0.52 12.6 0.1 1 20 740 759 740 762 0.93
Sequence Information
- Coding Sequence
- ATGGATacagaaacttttaatttacgatGGGAAGAGCATCCAACACCAAATGTTGCAACAGAAGAGGTGATCTGTGGTTTGGATGCGTCTCAGACTGGTTCCTACCCTGCCATGGCTACAGAAACAATAATACCTGAAACAGATCAGATGGCTGCTGAAAACTTAATGTACCTTTCGCAAGATGTGGTGAACTATGCTGATACTTCAGACTTGGCTGATGACCCAGTGGTTGAATGCGTTACCGAGGAGGTTATAACAGATGATTGGGTCATATCAGGTGGCCAGGATAGGGTGGAAGTGCCTTTAGAACATTTAACAAGTACAGAATTGATTATCAAAGAAGAAAATGACATAGATGTCCCATTACCAACAGATCAGGATGAGTACACAGCGATGCGGCCGTGGCCATGCGACTTTTGCTCTCGGCGATTTCGTAAGAAGGCGGCTCTCATGAATCACATGGTTGCACACCAGAACGACCGGCCTCATGCCTGCAACTTATGCGGCGTGCGATATGTTCGAAAATGTGACCTTATGAATCATCTGAAAGTGCATGCCTTCGTGCCTGATCATTCTGATTCCATGGATTTTGatgaaGTATTAGTAAATCACCAAGTGATAAAGCCAAAGAAAAAACGGGGTAGGCGGAAAAAAGCATCTGTAGAAGATTCTGTTGAgAACGGAGTATGGGAGAACATGACGTCGGCGCGCACGCAGCAATGGTCGAGACGGGCGCGGTCTCCAGCCCGTGCTCCCCCTCCTCCGCGCACGCCCACGCCACCGCCGCCCCGCTCTCCGCCCACACCGCCGCCACCCGCTGACCCGCGTCGTCCGTTCGTCTGCCTGCACTGTGGTGTAGGCTTTGCTAGAGAAAAAGCACTGCAGTCACATTCTAGAaTACACGGAGGTGATTCGCCGTTAGAGTGCGGTGCGTGCGGTGAGCTCTGTTGGTCTCGAGAGGCATTGGCGGCACATGCACGCTCCAAGCACCCGCATATGCCGGTGCCCGCACCAAGACGCCGCGAGCCATCTTACAATGATTCCAATTCAGGTGATGACATGGATTTCACACTTTCTCCACTACAGCAAGACAGTGGAAGCGAACGACCCGTGTATGACACCAAAGGACCTGAATTGTTCTGCCAGGACTGTGGTGTAGCATTCCAAAGAGCTGATCTCTTAAGAAGACACGTCGCTGCAGCACACAGTTATAAACGTCACGACAGTTCCGGTGAAGGTGGCGGCGGGGGTTCATGGGCGGAACACTCGTGCGATGTGTGTGGCGAGACGTGTACCGACGCTTTACAGCTGCTAGCACACGCTGAGGGTCATGCCCGTAACCACAACACCAACAACAGACGGTTTAAAAAGATGGGCCGAGGTCGTAGTGGTACTTCGGCGTCAAATAGTTCGCGACAATTTCCTTGTAAAGAATGTGGCAAAGTGTTTGGTTCAAGGAGTTCACAACAAATCCACATCAGAATCCATACCGGAGAACGGCCATATGCATGCCGCTTCTGTTGGAAAGCGTTTGCAGATGGAGGTACATTGCGGAAACACGAAAGGATACATACAGgagAAAAGCCTTATGCATGTGCAGTCTGTCCTCGGGCATTTAATCAACGAGTGGTGCTGAGAGAACATGTCAGATCACATCATTCAGCACCGGATTATAGAATTTCAAATGGTCGTCCGGCATTTTGTTGCGTGGTGTGCGATCGAACGCTGCACTCGAGCGCCGAGCTGGTGCAGCACCTCATCCAGCACTGTGATGCCAACACTGCGCTCAAACGGCAACCTCAGAATGGACCACGTAAATATAAACGGAGACgaaaatttaaacaagagtTAGACACGTTATCGCGTGACTCGAGCGGAGAGAGGGAAGCCGACGAAGAGGGAGAAGGAGAGAGGGTGGATGAAAAAGTGTGGGAGATGCAGGTGGCTCCACCTCCGCCCCAACCGGTGTCGCGCACACGGCGACGGCGTGCGCGCACCCCGCCACCGCGCCCGCGGATGATACATACTTCTGAAGAGCCTCGACCACGAACTAAGCAGGTTCGGACTCGACGGCCGCCGCGACATCCGGCCGACGATCTGCTGGCGATTCGACCGCATCTTAGCGCACCCACGCCCTCGCCGCCGCCGGTCGCAGCCCCGCCGCCGGTGCCCTCGCCGACGCCTTCGTTGAGCATTAAGACTGAAGACGACGGCCCCTTCAAATGTGAAATGTGCGATTTGGAATTCGACAGGCGCGATGCGCTACTACTCCACGTCCCCGTGCATATATGA
- Protein Sequence
- MDTETFNLRWEEHPTPNVATEEVICGLDASQTGSYPAMATETIIPETDQMAAENLMYLSQDVVNYADTSDLADDPVVECVTEEVITDDWVISGGQDRVEVPLEHLTSTELIIKEENDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDHSDSMDFDEVLVNHQVIKPKKKRGRRKKASVEDSVENGVWENMTSARTQQWSRRARSPARAPPPPRTPTPPPPRSPPTPPPPADPRRPFVCLHCGVGFAREKALQSHSRIHGGDSPLECGACGELCWSREALAAHARSKHPHMPVPAPRRREPSYNDSNSGDDMDFTLSPLQQDSGSERPVYDTKGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSSGEGGGGGSWAEHSCDVCGETCTDALQLLAHAEGHARNHNTNNRRFKKMGRGRSGTSASNSSRQFPCKECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDYRISNGRPAFCCVVCDRTLHSSAELVQHLIQHCDANTALKRQPQNGPRKYKRRRKFKQELDTLSRDSSGEREADEEGEGERVDEKVWEMQVAPPPPQPVSRTRRRRARTPPPRPRMIHTSEEPRPRTKQVRTRRPPRHPADDLLAIRPHLSAPTPSPPPVAAPPPVPSPTPSLSIKTEDDGPFKCEMCDLEFDRRDALLLHVPVHI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00923938;
- 90% Identity
- -
- 80% Identity
- -