Ejap022529.1
Basic Information
- Insect
- Eumeta japonica
- Gene Symbol
- -
- Assembly
- GCA_005406025.1
- Location
- BGZK01000423.1:248975-252946[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0004 0.09 15.0 0.4 1 23 124 146 124 146 0.99 2 19 3.9 8.8e+02 2.4 0.0 2 23 172 194 171 194 0.92 3 19 0.052 12 8.4 0.2 3 23 218 239 217 239 0.96 4 19 0.0015 0.35 13.2 1.0 3 23 247 268 246 268 0.96 5 19 0.00063 0.14 14.4 1.6 3 23 275 296 274 296 0.97 6 19 0.02 4.5 9.6 0.8 1 23 300 323 300 323 0.94 7 19 0.00075 0.17 14.2 1.0 2 23 330 352 329 352 0.95 8 19 0.11 24 7.4 0.8 1 23 358 380 358 380 0.95 9 19 0.0036 0.81 12.0 0.9 1 23 386 409 386 409 0.88 10 19 5.9e-05 0.013 17.6 0.9 1 21 467 487 467 490 0.91 11 19 0.025 5.6 9.4 0.0 2 23 517 539 516 539 0.94 12 19 1.8 4.1e+02 3.5 1.2 1 23 561 584 561 584 0.91 13 19 1.7e-05 0.0039 19.3 0.2 1 23 589 612 589 612 0.96 14 19 0.21 47 6.4 3.1 1 23 617 640 617 640 0.79 15 19 7.9 1.8e+03 1.5 0.4 2 23 646 668 645 668 0.83 16 19 0.0017 0.38 13.0 2.0 1 19 675 693 675 698 0.90 17 19 0.0072 1.6 11.1 1.3 2 23 705 726 704 726 0.95 18 19 1.2e-05 0.0026 19.8 2.1 1 23 732 754 732 754 0.98 19 19 3e-06 0.00067 21.7 1.9 2 23 761 782 760 783 0.94
Sequence Information
- Coding Sequence
- ATGCGACGTGGCCGTGAAAGTTGTGCGGTGAGATCTTTGACGTTTAATCTTCTTAAGATGACACGTCGCAAGGGAACGATTCGCGACCTCGTCGAGTCTCTCTGTCGCAAGAAGTGTAGGGAAAGGGCAAGAGGTGCGCAGAAGGCCGCGAAATCTGCGCAGAAACGATCGAAAAGGACGCAAATATCGGATGACGCATGCGTAAACGACGACGTTACAAAACGCAATGATCAAGCTTGGGACCCATCAGTCGATAGCACGGTCAAAAAGAAATCCTCGGCTAGGGAGAGGCTGGAAAAGATAAGAAGGAACGTCCTGGAAGTGTTGAAAAACTCTAACATAATGCCTTTCCGTTGGCTGAAGAGTTCCTACAGATGCTTCTACTGTTACGACATCTTCGAAGATCCCGGCGAGCTGAAGAACCACCAGCGAGTGCACGCCGGCGACGAGGTCAAGGAGAAGGCCATGAACAATTATTGGGAAAACGTCGTGTACGTCGACGTCTCAAATATATCTTGTAGTCTCTGTCCCGAACCGATGGTCGAGTTGTACGAACTGATAGACCACCTGATAAGTCGACACGGTGTCGTATACGACAAAGACGTGGGCGCTTGTATGTACCCGTTCAAGTTGGAGAGTCTCTCCGTCGCTTGTTTGGTGTGCGGCGCGAACTTTAGAACCTTCGGACCGCTCCTGACTCACACCAACAAGAACCACAAAGGCTGCTCGTCCATACTCTGCGACGCCTGCGgtcaacatttcaaatattctcaGCTGCTGAAGGAGCACATCAAGTCCGTGCACCAGAACTGCACGGTCCTATGCACCAAGTGCGGCGTGAGCTTCGACACGAAGAACAAGTTGAGGACGCACGAGCAGCGGAGCCACGGCAGGAAGTTCAAATGCCTGGTGTGCCCGGAAATGTTTCCCAGCCACTACAAGAGGTCCCAGCACATGGCCGAGGAGCACAAGAACAGGAGCCAAGTGAAGTGCCTCTACTGCCCGAAGAAGTTCGTCTTCAGGAGCATGATGATGTCGCACCTGAGAGACACTCATCTGAAGGAGAAGAATCACGTATGCGGCGTCTGCGGCTGGCGTGCTTTCAGTGTCAACAGACTGAAAAATCACATGTACAAACACAGCGGGGAGAAGCAGTTCAAATGCACGGTTTGCGAAAAAGCTTTCACGactaagaaaattatgaaagccCACTCCGCTAGAATGCATAAAAACAACCAGCCCACGTACGATGGCGTCGAAGAGCGACCGACAGATAAATGCAGTAAACAGGAATCTATCGGAAACCCGCCTGCTGACAGTAAGAAGTCGTTGCGGGAATTACTGCTGGATATTCTGCAGTGCTCCACGGCCATGCCCTTTAGGAGATACGGCAACAAATACAGATGCTTCTATTGCGATAGAAGCTTTTACTACGCCAGCGAGCTACGCGAGCACACGGGAGGCGATCACGGAAATCCCGATTTTACGAGGGCGCTCGTGAAAAATATCACGGACGCGAGTCCGGTGAAAATAGACGTAACGAATTTGAATTGTAAGCTATGCCCGCGAGCCGTAGACAACGTGGAGGAGTTGGTGCAACACATGAACGAATATCACTCGAAGAAATGCAACAAGGACGTGATGCATTGCCTTTTGCTTTTCAAACTGGCGGACGATAAGTTCTCCTGTTTGATGTGCGACCAAGAATTTCAATTCTTCGGCCCTCTTCTATTGCACACGCACAGGGTGCATAAGAACAGACGGTTCATTTGCGAGATTTGCGGTCAAAGCTTCTCTTCTAATGGTAGCATAATGAGGCACACTCAAAGTGTCCACGCGACAGAGAGCTATCAGTGCAGGCATTGCGATAAGAAATTCTATGCTCTGTACCGTAGAGACAACCATGAGAGGAGGATACACGACCTATCGAAACTAAAATGCCACGTTTGCTCAGAGATTCTGGGCAGCGAATACAAACGCGACACGCATCTGGCCACCGTCCACGACGTGTGGACGGCGGAATTCAAGTGCGCCAAATGCCAGAAGGTCTTCCGTTTCAGGAATCAGCTGGTGAACCACGACAAGAGGGTGCATCTAAAGGAGAAGAACATCACGTGCGATCTGTGCGGCGATAAGTTCTTCGACAGGCACCTCCTCAAACTCCACATGGTGAGGCACAGCAATACAAAGCCCTTTCACTGCGACCTGTGCAAGAAGAGCTTCCCCAGGAAGAGAGCGCTAGAAATTCATACGAGGATACACACGAACGACAGGAGATGCGTATGCAAAGAGTGCGGCAAAGCCTTTATACAGACCGCTAGTTTGAAACTGCATATCAGAGTGCATCACAGTAGAACCAACGATGCCAATAACGTCAATTGGTGA
- Protein Sequence
- MRRGRESCAVRSLTFNLLKMTRRKGTIRDLVESLCRKKCRERARGAQKAAKSAQKRSKRTQISDDACVNDDVTKRNDQAWDPSVDSTVKKKSSARERLEKIRRNVLEVLKNSNIMPFRWLKSSYRCFYCYDIFEDPGELKNHQRVHAGDEVKEKAMNNYWENVVYVDVSNISCSLCPEPMVELYELIDHLISRHGVVYDKDVGACMYPFKLESLSVACLVCGANFRTFGPLLTHTNKNHKGCSSILCDACGQHFKYSQLLKEHIKSVHQNCTVLCTKCGVSFDTKNKLRTHEQRSHGRKFKCLVCPEMFPSHYKRSQHMAEEHKNRSQVKCLYCPKKFVFRSMMMSHLRDTHLKEKNHVCGVCGWRAFSVNRLKNHMYKHSGEKQFKCTVCEKAFTTKKIMKAHSARMHKNNQPTYDGVEERPTDKCSKQESIGNPPADSKKSLRELLLDILQCSTAMPFRRYGNKYRCFYCDRSFYYASELREHTGGDHGNPDFTRALVKNITDASPVKIDVTNLNCKLCPRAVDNVEELVQHMNEYHSKKCNKDVMHCLLLFKLADDKFSCLMCDQEFQFFGPLLLHTHRVHKNRRFICEICGQSFSSNGSIMRHTQSVHATESYQCRHCDKKFYALYRRDNHERRIHDLSKLKCHVCSEILGSEYKRDTHLATVHDVWTAEFKCAKCQKVFRFRNQLVNHDKRVHLKEKNITCDLCGDKFFDRHLLKLHMVRHSNTKPFHCDLCKKSFPRKRALEIHTRIHTNDRRCVCKECGKAFIQTASLKLHIRVHHSRTNDANNVNW*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -