Ejap004287.1
Basic Information
- Insect
- Eumeta japonica
- Gene Symbol
- -
- Assembly
- GCA_005406025.1
- Location
- BGZK01000046.1:232272-249409[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.6e-05 0.0036 19.4 2.3 1 23 74 96 74 96 0.98 2 14 0.0016 0.37 13.1 1.2 1 23 102 125 102 125 0.96 3 14 0.00051 0.11 14.7 3.5 1 23 131 153 131 153 0.98 4 14 0.0012 0.27 13.5 0.9 1 23 159 181 159 181 0.93 5 14 0.00045 0.1 14.8 2.5 1 23 187 209 187 209 0.97 6 14 0.017 3.8 9.9 2.5 1 23 216 239 216 239 0.92 7 14 2.5e-05 0.0056 18.8 1.1 1 23 247 270 247 270 0.98 8 14 5.5e-06 0.0012 20.9 2.0 1 23 276 298 276 298 0.99 9 14 4.6e-05 0.01 18.0 0.3 3 23 306 328 305 328 0.92 10 14 5.6e-06 0.0013 20.8 0.4 2 23 335 357 334 357 0.95 11 14 5.2e-06 0.0012 20.9 0.2 2 23 365 387 364 387 0.96 12 14 3.8e-05 0.0085 18.2 1.1 1 23 394 417 394 417 0.97 13 14 0.5 1.1e+02 5.3 1.7 2 23 670 693 669 693 0.91 14 14 0.017 3.8 9.9 3.1 1 23 839 861 839 861 0.98
Sequence Information
- Coding Sequence
- ATGGTAAACTCGAAAATTGCCGAGCAAAGCTTAGTTGCTCagATTAAGCGTGAAATACCGGAATTCGACTTAGGAGACATGTtatcacaaaatgtattagaagAAGAATATCAGGATCATACTCCAGagttttctgaatattttatttcaaaagcaagtaatgtaaaaaagaaaaaaagaagagCTAGGAAATCAACATACTTAACAGAGTATTTTAGCCATAAATGCTCTGAGTGTAAAAAGGTTTTTGCTGATAAGACTTTGTTGAAAGTTCACAAACAAATACATGCCAAAAGGTATCTATACAAGTGTGACCAATGCGAATTGagtttcaaagtaaaaaaatacatggcaAGACATAAAGCAAGAGTTCACGAAAGGAGGAAcaaatataaatgcaatttcTGCCACAAAGATTTTTTCACCAATGGCAGCCTTCTATCACACACCCTGGTGCACACTGgtGAAAAACCATTTAAATGTGAATCTTGTGATAAATCCTTCAGCAGAATTGATGTACTACGAATGCACAACTTCATACATACTGGAGAGAAACCTTATAAATGCAACTTCTGCGAGTATGCATGCCGTGATCCCACCTCCCTAAAAAGACACGAAGCTCGACACATGGGAATTCTACCACAGTACAGAtgtcaaatatgtaaatataaGTGTGAGAAGAAATGGGCACTGAAACAGCATGTCGCCGAAAAACATTTGAATCTAGACGTGAGAAAATACAAATGCGGCCAATGCGAGAAGAATTACAAGaagaaagtattattaaataatcatattAGGAGCGTTCATGACCAATGCAAGCCATACCAATGTGATGTATGCAAGAAATATTTGACGACTCGCAGCAACCTCATGTCGCATATGAATAGACACTTCGGCGAGAGGGTGTCGGCGTGCGACTACGACGGCTGCGGGAAGACCTTCAAGACTAAGGGTGAAATGCAGAAACACAGAATAATACATTACCCGAAAGAGCAGAAACCGTGTCCTGACTGTGGCAAAAGATTCACCAGACAAGCGAGGCTGGATAGGCACAGGATGGTGATGCATAGAACGAGGTGGAGGAACACCCCTTGTGCGGAGTGCGGGATTCGCTTCTACAGTCAGTCATATCTTGACAAACACATGAGAACTGTGCACAACGAAGACAGGGACACGTACATGTGCGATTACTGCGGGATGCGGTACAACAACAAACCGGGGCTGATCGTCCACATGAGGCACAAGCATTTTAAGAAGAAGaagagaaaaaaaaaggagttgCCTATCAATATAGCTGATGTAAAAATAGAAGCGATAGATGTAGAAGAAAACGATTTGGAAGAAGTTCTGAGAAGAATGGAGCAATGTCAAGAAAATACTAAATCAAATATGGCAGAAAACATGGACGACAGTCAAAAACTAGCTAAAGAATGTATAGAAGATTTGTTACAGAGAGTGAGAAAGAAAATTGAACTAAAGGCCTTAGCAAGATCAagaggaaaaattgaaaattatatagcaTCAAGAAAAAGACAGAATAGCCTATTACATAATGCACAAGCAGCACAGGGAGAGAAGTTGATCAAAGCAGCGGTAAAGAATCAAGAAGATGAGTACCAAGatgtaaaagaaatagaaacaaCAAAAGTAGAAAGGGTGTATAACATAGATAGACCGAGAAGAAATAGTAGCGTTAGGAATTACATGGATTTCTTTAAAGAACCGGAAATGTATATGGTGCATGATGAAGATGTTCCAGGCCCAAAGGAGAAGATTCAAAACAATGTGAAAACTGTCAAAACATGTAAACGAAAAATAGTCAGAAGTTCGACAAACAAAATGGCTGCTGTCCAAAGGAAGGCTGAAGTTCCCGAAAACCCCtctgaaaaattcaaattcaacgcTTTCCAGTGTTATGCTTGCTTTCAGtTATTTGAAACCAAAAGAAAACTCATAGAGCACTGTAAGCAACACTTCAATGTAGACAACAAAAGGAGAATCACTAAATGTCCGTTTTGCGATTTTGAAGTCTCAACCAAGAGACATGGCATCTGGAGACATATGAGAAAAGAACAcggtgtaaaatttaattacacgtCCTCAGAATTGACTCTTTTAAAAAATCCcaacacaaatgaaaaaaaatttgttgtgcGATTGAGTGACAAAACGGCTGATTCTGAAGCAGTAGACAATAGTGATACTTTAAAAGATATCGGTGTAACAGAAATGGAAATTAGACCCAGCATTGAACATTTGAATAAGCAGTTAGCCGTTGAGCTGGATAGAAAGAATAGGAACAAAAGATACGGGACAGTATTGAAGAAGAGGTTGGTGAGAAAAGATAAAGAATGGTTTGTAGAGATGGAAGAGGTTCATATAGAGGGCAGAAATATTAAAGATGTTAAGAAATCGGATTATGTAGGCAAACAAGATCTGTCCAAAGATCTCTATTTGGAAGAAATGATAAAGTTGAGCAAAAGTGCCAGAAAAGAGGGTAGAAAGATACTGTTTCCATGCAATATGTGTTCTAAAGTGTGCACTGCTTTATGCGGCCTGAAATTACACAGGCGAGTTCACAATGCAAATGCTAAACCATTTAGACCTAAAATATGGAAACACAAAATGGAACAAAGGTTTGAAACACCAAAGCCACTTATAAAAGCGAAAGAAGGGAATGAAGAGAATAGGCGAGCAAAACCGAAGTCCATACCAAAAAAGAGGTACAGATGCGATGAAAATCTAAAGGAattcttcaaaaacaatataaccGGATCAGATGTGGAGTTTGAACAGTTTCTCAGGGAATATAGAAAAGTTTCCAAAATACACAAAGACGATTTAGAAAAGTTGGAAGATGACAAGgaatttggtataaaaaaaacaacagacgTAGAAAGAAGGCATACAgttaagaatagaaaaatagacaggataataaaaaagaataaacaatatatcAGGCTCAGTATGATGATCCATATAATTATATCTGAAACTGAAAGAAGGTACCAGAATGTGGTCCAGTTCTTGAAATATCAGCTGAGATAG
- Protein Sequence
- MVNSKIAEQSLVAQIKREIPEFDLGDMLSQNVLEEEYQDHTPEFSEYFISKASNVKKKKRRARKSTYLTEYFSHKCSECKKVFADKTLLKVHKQIHAKRYLYKCDQCELSFKVKKYMARHKARVHERRNKYKCNFCHKDFFTNGSLLSHTLVHTGEKPFKCESCDKSFSRIDVLRMHNFIHTGEKPYKCNFCEYACRDPTSLKRHEARHMGILPQYRCQICKYKCEKKWALKQHVAEKHLNLDVRKYKCGQCEKNYKKKVLLNNHIRSVHDQCKPYQCDVCKKYLTTRSNLMSHMNRHFGERVSACDYDGCGKTFKTKGEMQKHRIIHYPKEQKPCPDCGKRFTRQARLDRHRMVMHRTRWRNTPCAECGIRFYSQSYLDKHMRTVHNEDRDTYMCDYCGMRYNNKPGLIVHMRHKHFKKKKRKKKELPINIADVKIEAIDVEENDLEEVLRRMEQCQENTKSNMAENMDDSQKLAKECIEDLLQRVRKKIELKALARSRGKIENYIASRKRQNSLLHNAQAAQGEKLIKAAVKNQEDEYQDVKEIETTKVERVYNIDRPRRNSSVRNYMDFFKEPEMYMVHDEDVPGPKEKIQNNVKTVKTCKRKIVRSSTNKMAAVQRKAEVPENPSEKFKFNAFQCYACFQLFETKRKLIEHCKQHFNVDNKRRITKCPFCDFEVSTKRHGIWRHMRKEHGVKFNYTSSELTLLKNPNTNEKKFVVRLSDKTADSEAVDNSDTLKDIGVTEMEIRPSIEHLNKQLAVELDRKNRNKRYGTVLKKRLVRKDKEWFVEMEEVHIEGRNIKDVKKSDYVGKQDLSKDLYLEEMIKLSKSARKEGRKILFPCNMCSKVCTALCGLKLHRRVHNANAKPFRPKIWKHKMEQRFETPKPLIKAKEGNEENRRAKPKSIPKKRYRCDENLKEFFKNNITGSDVEFEQFLREYRKVSKIHKDDLEKLEDDKEFGIKKTTDVERRHTVKNRKIDRIIKKNKQYIRLSMMIHIIISETERRYQNVVQFLKYQLR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -