Ejap046996.1
Basic Information
- Insect
- Eumeta japonica
- Gene Symbol
- -
- Assembly
- GCA_005406025.1
- Location
- BGZK01001649.1:56266-83599[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.3 1.6e+03 1.6 0.1 14 23 307 317 305 317 0.85 2 12 0.0032 0.73 12.1 0.3 1 23 322 344 322 344 0.97 3 12 4.3e-05 0.0096 18.1 1.7 1 23 361 383 361 383 0.97 4 12 2.2e-06 0.00049 22.1 1.4 1 23 389 411 389 411 0.98 5 12 1.1e-06 0.00024 23.1 3.5 1 23 418 440 418 440 0.99 6 12 4.2e-06 0.00094 21.2 0.2 1 23 446 468 446 468 0.93 7 12 2.4e-06 0.00054 22.0 0.2 1 23 474 496 474 496 0.98 8 12 1.3e-05 0.003 19.7 1.5 1 23 502 525 502 525 0.96 9 12 0.00037 0.084 15.1 5.2 1 23 531 554 531 554 0.94 10 12 1.8e-05 0.0041 19.2 3.1 1 23 560 582 560 582 0.99 11 12 3.8e-06 0.00085 21.4 0.6 1 23 588 610 588 610 0.97 12 12 0.0027 0.62 12.4 0.0 1 21 616 636 616 640 0.92
Sequence Information
- Coding Sequence
- ATGTCGGTAACGTTGAAGAGGTTTAGCATTATACCAGATTGTTCGAAACCGAACGATGTGCCGAAAACGACGTCTGCCGAAATCAGTAAAATTTTGCAGAATGTGCAAAAGgtCCAAAATGGTGATACTATAGAGAAAACAAATGAACAATTGTTTTCCATATCATTTGATGAAGGTTCACTTGCAGAGTCATCTAAAGATGAAAATGAAGCTACCAGTCAAAGCGACTCCGACCAACAGAAATATGTGATCGGAAAGGTAGAAATCGTAGATGAAACGGGACAGGAGCTTGATGAAGCGGACGATGAAGATACAATACTGATGGAGCAAGACGAAGACGGTTCGATAATCAGGGTGGTGAgtggaaaaaaattgatctaTGAGAACAACCAGATATCTCTGCTCATACCTCAGGACGCCAGCGACGTCGAAAGCGAGAACAAGGACGAAGGGGGAACTAAGAACGACGGGCCTGATTCGAATGAGGACGACTCACAGATAGAGCTACAAGTGTCAGGAGACGAGGAGACGGCTAACGCGATCATAGCCGCGGCCAAGGAACAAGgCGGTGCCTTTATAAAAGTGGAATCGGGAGCAATGTACCGGGTGAAAACCATAGAGAGCAAGATAGAGGACGACCTTGACAAATTGGACAGTCTTCAGGCGGTTGGGTGCGCCCAGTTcgagtgcagcggccgacggGGAAGCAACAAGAAGAGGAAGCAGCCCGCCGCAGGGGGGGGTGAAGCTCAGTTCAACAACGACGACGGCGTTTTAATCAGAACCCATTCAAGTGGAGGAGCAATCGTCCTTCacaactggtttgcagaatttaaGCGCGGTCGTGTTAATCTCGACTCACCGTGGAGCGCGGTCGTGAGCTCGGTACTGCGGCGAGGCGAGTTCAAAGGCGATGCGCGCGCCCTCTCCGAGCACATGCGCACAGTTCACGACGCCAGAATCTACATATGTCAGACTTGTGGTCAGGTTATGAGGAAGAAGAGCGATTATGTCAAACATTTAGcggtACATGGCAACCAGATGCAGTCCACAGAATTGCTCATGGACAAAAGTAAAGTTCACGAGTGCAATGTCTGCCAGAAGAAGTACAGttctAGAAATCTCCTTTTGGAACACATGAACATCCATAGCGGGACAAGACCGTATGCCTGTGAAGTCTGCAACAAATCTTTTGCATCGAAATACACATATCAATCACATCTTAAAACACATCTGAACAGGCCGCGGCCCTACAAGTGCAAACAGTGCGACAAATCGTTTTTCACTCAACAAAATCTGAATCAGCATGCGAAAACCCATTCTAGTATAAAAGAGTTCGTCTGTAAGATATGCGGGAAAGCGTTTGGCACACAACACAACCTGGAAGTCCACGGGGTTGTGCATTCAGGAAAAAAGCCCTTCGTGTGCGGTATATGTTCAAAGGCCTTCGCTAGGAGGTCAGAAATAAGGGATCATATAAGAACACATACagGCGAAAGGCCGTTTTCATGCGACATGTGCTCAGCAACATTCTCTCAGCGCTCGAATTTACGCTCGCACAAACGCGCGACCCACTTCGACGACAAAAGACATTTCTGTCCGCATTGCGATAAACGGTTCAAACGTCGgagGCTCCTGGACTATCATATAAAGGCGACGCACACGGGCGAGCGGCCGTACAAGTGCACAGTGTGCAGAGCCACCTTCGTGTATCcggaacattttaaaaaacatcagcgcATACACAGCGGCGAGAAGCCTTACGTTTGCGAGGTGTGCGGGAAATCGTTCACGTCCCGCGACAACCGGAACGCGCACCGGTTCGTGCACAGCGACAAGAAGCCGTACGAGTGCGCGCTCTGCGGCGCCGGGTTCATGAGGAAGCCGCTGCTGTTGGCGCACATGAACGCGGCGggACATCTCACTGAAACCATAGTGGTGAACCAACCTAGGGTTACCAGCCAGATAGTTAAGAATGATGATtacttTAGTGCGGCAACACTGATAGAGAACGCAGAGGAAGAGGAAGATGATgatgaaaaatctGAACCTGAAACGATATTGGCCGGCGACCGCAGGATAGTGCTGGAGGGAGatGAACAAGTATACACCGTAAACATCCCAAGCGACACTGAAGGCGAGGATAGACAAGTCACCTTCACGACGAAAGGCGTCGAGGGTAAAGCCACTCTGAACATGATCTCCGACGCTAACGACCCGGGCTTATTGACGTTGGCGGATAATATAGTGACCACGGATATTAAGTCTGAAGTCAGCCTGCTGCAAGAACACACGCAAGAGCAGGAGGATAAAGAAGTGCACGTGATAACAGATCAAGACGGacagTTGGTGTCTACCACGGACGGTAGCGTGATACGCTTGGTGCAGATTCAGCTCGCTGACGGTAACAACGGCTGGGCGATGATCAATACGCCGTGA
- Protein Sequence
- MSVTLKRFSIIPDCSKPNDVPKTTSAEISKILQNVQKVQNGDTIEKTNEQLFSISFDEGSLAESSKDENEATSQSDSDQQKYVIGKVEIVDETGQELDEADDEDTILMEQDEDGSIIRVVSGKKLIYENNQISLLIPQDASDVESENKDEGGTKNDGPDSNEDDSQIELQVSGDEETANAIIAAAKEQGGAFIKVESGAMYRVKTIESKIEDDLDKLDSLQAVGCAQFECSGRRGSNKKRKQPAAGGGEAQFNNDDGVLIRTHSSGGAIVLHNWFAEFKRGRVNLDSPWSAVVSSVLRRGEFKGDARALSEHMRTVHDARIYICQTCGQVMRKKSDYVKHLAVHGNQMQSTELLMDKSKVHECNVCQKKYSSRNLLLEHMNIHSGTRPYACEVCNKSFASKYTYQSHLKTHLNRPRPYKCKQCDKSFFTQQNLNQHAKTHSSIKEFVCKICGKAFGTQHNLEVHGVVHSGKKPFVCGICSKAFARRSEIRDHIRTHTGERPFSCDMCSATFSQRSNLRSHKRATHFDDKRHFCPHCDKRFKRRRLLDYHIKATHTGERPYKCTVCRATFVYPEHFKKHQRIHSGEKPYVCEVCGKSFTSRDNRNAHRFVHSDKKPYECALCGAGFMRKPLLLAHMNAAGHLTETIVVNQPRVTSQIVKNDDYFSAATLIENAEEEEDDDEKSEPETILAGDRRIVLEGDEQVYTVNIPSDTEGEDRQVTFTTKGVEGKATLNMISDANDPGLLTLADNIVTTDIKSEVSLLQEHTQEQEDKEVHVITDQDGQLVSTTDGSVIRLVQIQLADGNNGWAMINTP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -