Ejap049918.1
Basic Information
- Insect
- Eumeta japonica
- Gene Symbol
- -
- Assembly
- GCA_005406025.1
- Location
- BGZK01001957.1:12122-64603[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.8e-05 0.004 19.3 2.7 1 23 422 444 422 444 0.98 2 20 0.0059 1.3 11.3 2.0 1 20 450 469 450 472 0.94 3 20 2.5e-05 0.0056 18.8 4.6 1 23 487 509 487 509 0.98 4 20 3.1e-05 0.007 18.5 4.6 1 23 515 537 515 537 0.99 5 20 3.1e-05 0.007 18.5 5.3 1 23 543 565 543 565 0.97 6 20 1.1e-05 0.0025 19.9 9.4 1 23 571 593 571 593 0.97 7 20 6.2e-07 0.00014 23.8 2.9 1 23 599 621 599 621 0.97 8 20 8.5e-05 0.019 17.1 6.7 1 23 627 649 627 649 0.97 9 20 8.4e-05 0.019 17.1 6.5 1 23 655 677 655 677 0.97 10 20 4.1e-07 9.2e-05 24.4 1.9 1 23 683 705 683 705 0.98 11 20 8.1e-06 0.0018 20.3 7.7 1 23 711 733 711 733 0.98 12 20 2.9e-06 0.00065 21.7 7.6 1 23 739 761 739 761 0.98 13 20 7.3e-06 0.0016 20.5 6.6 1 23 767 789 767 789 0.98 14 20 1.8e-05 0.0041 19.2 5.1 1 23 795 817 795 817 0.96 15 20 5.3e-05 0.012 17.8 5.1 1 23 823 845 823 845 0.97 16 20 5e-07 0.00011 24.1 5.8 1 23 851 873 851 873 0.98 17 20 4.7e-05 0.011 17.9 7.8 1 23 879 901 879 901 0.97 18 20 2.8e-06 0.00063 21.8 5.2 1 23 907 929 907 929 0.98 19 20 0.00061 0.14 14.4 0.3 1 23 936 958 936 958 0.96 20 20 1.8 4e+02 3.5 4.0 1 23 968 990 968 990 0.97
Sequence Information
- Coding Sequence
- ATGAATCCAGAACATCATAATCTTAATACGGGCGGTGGACAGCCTCCAGGGAATTCTGAGTCTCAGAATCAAAGATCACAAGCATCTCAACAAGGGCAACCGAATAATTTACCACCGACGACGTCTGCTACAGATCTCAGAGTGAATTCGGCTTCTGCGGCTGTTAACGTCGCGTTGTCAAGTGTGGCTAAATATTGGGTGTTCACTAATTTATTTCCTAGCCCTATACCGCAAGTGTCTGTATATGGTTTACCAACTGGTGCCCGTATAGAAAATGGTAAACCTGTTCAGgaCCCATTAAATCAATCTCATGCTAGTATATTAAATGGTGATCCCAATATAATACTGGGTCATCATTCTTCAGCTCAGACACCTGTTTCTGTGTCTACAGGGTCTGGTCAACAGTTACCTGTATCACAAATTATCGCTGCACAATCTGCACAAACTCATGAGTCTGTTGTAGGACATGGACAGCAACAAGAATTATCAAATCAACAAAGTTCGAGCAATAGTGGTGCTCAAGGTGCCGTTAATTCAGGCCAAAGCAGTCACCAGCAGCAGAGCCATCACTCTCAACAACACATAATGCAACAGCAACTTATGGCATCGGCTAGACCAGATCACACTAATCAACAGATTCAATTGACAGTGAGTGAGGATGGCATAGTCACGGTGGTGGAGCCGGGTGGTGGTGGCAAGCTGGTAGAAAAGGACACGCACCACGACGCTGGACATGGCAAGGCGCCTCCTGACCACGGCCTCACGGTCCATCAGCTGCAACAAATTGTCGGACAGCAGGTGATTGACAGTGTAGTACGTATAGAACAAGCCACTGGGGAACCAGCAAATATTCTGGTCACCCATAATCCTGATGGAACAACCTCTATAGAGGCCAGTGCTGTAGATCCCCTCATTGTCAAAGATGAGAAAAATGCAGCGAAAATAGAGACAGCACAGTTTGCGATACCTGCTGATATCAAGGATATCAAGACTGCAATTGACTTGAAGagTGTTGGAGCAATGGGTATGGAAGGGGCAGTAGTAAAGATATCCACTGGTGCATCAGAACATGATATGCATGCAATGTATAAAGTTAACGTTGAAGATCTATCACAACTTTTAGCTTATCATGAAGTGTTTGGAAAATTGAATTCTGAGGGACAACAGCAGACAAAGCAAGTAATAGGTGAAGTGGAAGTTGAAGCAGGCACTAGTGGAGCTATGAATACATCAGAATCGCCGCCGGGCGCCATCGGGGGTCACCACACGTGCGATATATGTGGGAAAATGTTCCAGTATCGTTACCAGCTTATAGTTCACAGACGTTACCACGGTGAGCGCAAGCCGTTCACATGTCAAGCGTGTGGACAGGCTTTCGCTAACCACGCTGAATTAACGCGCCATGGAAAGTGTCATATAGGCGGAGATAGATCAAAACGGATGTCCCAAGATAAACCCTACGCTTGCACAACTTGCCACAAGACTTTTGCCCGGAAGGAACATCTGGACAATCACGTGCGGAGTCATACTGGTGAAACACCATACCGGTGTCAGTATTGTGCAAAAACATTTACAAGAAAAGAACACATGGTGAACCACGTGAGAAAACACACTGGAGAGACCCCTCATCGCTGCGACATATGCAAGAAGAGCTTCACAAGAAAAGAACATTTTATGAATCATGTTATGTGGCATACTGGTGAAACGCCGCACCACTGTCACATATGCGGCAAGAAGTATACTAGGAAGGAACACTTAGCGAACCATATGCGCTCCCATACGAATGACACACCATTCAGGTGCGACCTATGTGGCAAGTCTTTCACCAGAAAGGAGCACTTCACCAATCACATATTGTGGCACACTGgtgAGACACCTCATCGCTGTGATTTTTGTTCTAAAACTTTCACACGTAAAGAACATCTATTGAACCATGTTCGTCAACACACGGGTGAATCTCCCCACCGTTGCAATTTCTGCAGCAAATCATTCACGAGGCGTGAACACCTCGTCAACCATGTGCGGCAACACACAGGGGAGACTCCGTTCCAATGCGGTTACTGTCCCAAAGCCTTCACAAGAAAGGATCACCTtgTAAACCACGTTCGACAGCATACTGGTGAATCGCCTCATAAGTGTTCATACTGTACCAAGTCTTTTACGCGTAAAGAGCATCTGACCAATCACGTTCGGCAGCACACTGGCGAGTCACCTCATCGGTGTACCTACTGTAGCAAGTCCTTCACCAGAAAAGAGCATCTCACAAATCATATAAGGCAGCATACCGGGGAAACACCACACAAGTGCACGTTCTGCCCGAAGTCGTTCTCGCGCAAGGAGCATCTCACCAACCACGTGCGTCAGCATACCGGTGATACGCCCCATGCCTGCACCTATTGCAGTAAGACCTTTTCCAGGAAGGAACACCTCGTTAATCATGTCAGGCAACATACGGGCGAGACGCCGTTCAAGTGCACGTACTGCGCGAAGGCATTTTCGCGTAAGGAGCATCTCACCAACCACGTGCATCTGCACACCGGCGAGACGCCTCACAAGTGTCCCTACTGTACCAAGACCTTCTCCAGAAAAGAGCATCTCACCAATCATGTCAGGATACACACGGGCGAATCGCCGCACCGCTGCGAGTTCTGTCAAAAAACCTTCACGCGAAAAGAACATCTCACGAATCACCTAAAACAGCATACCGGCGACACCCCTCATACTTGCAAGGTGTGCTCTAAACCTTTCACTAGAAAAGAGCACCTTGTCACACATATGAGGTCGCACAGCTGCGGTGAGCGGCCGTTTAGTTGCGGCGAGTGCGGCAAGTCATTCCCGCTGAAGGGCAACCTGCTATTTCATGAGCGTTCGCACAATaagggcgccggcgccgcgcgcccCTTCCGCTGCGACATTTGCGCTAAGGACTTTCTTTGCAAAgGCCATCTGGTATCACATCGGCGGTCGCACGGTGAGGCAGCTACGGCCGAAGGCGTGGCGGCAACGCCAGCTGAGGGTGGTCCTGCAGAGGGCGCGCGTGATGCCGCTGAGCCCGTCGACGACAAGTGCAAAGTCGCTTGTGAAATTCAGGCGCACCGGCACGAAAGGAAACCACTAGATAGTGCACCAAACGAACGAGGTCCTAATGAAGGAAATGTTACTCAAAATCAAGCCAATGCTACTGTGATGCAAATTACAAATCAAgtGCGCAGTGGTGGATCGAGTGGAGGTGTGAGCGGATCGTTCGCACGGCCTGCCGCTGCCCAGCATCACGCGGCCACGGCCATCGCACACCATCCTGTCACCGTCAACTATTAA
- Protein Sequence
- MNPEHHNLNTGGGQPPGNSESQNQRSQASQQGQPNNLPPTTSATDLRVNSASAAVNVALSSVAKYWVFTNLFPSPIPQVSVYGLPTGARIENGKPVQDPLNQSHASILNGDPNIILGHHSSAQTPVSVSTGSGQQLPVSQIIAAQSAQTHESVVGHGQQQELSNQQSSSNSGAQGAVNSGQSSHQQQSHHSQQHIMQQQLMASARPDHTNQQIQLTVSEDGIVTVVEPGGGGKLVEKDTHHDAGHGKAPPDHGLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAVDPLIVKDEKNAAKIETAQFAIPADIKDIKTAIDLKSVGAMGMEGAVVKISTGASEHDMHAMYKVNVEDLSQLLAYHEVFGKLNSEGQQQTKQVIGEVEVEAGTSGAMNTSESPPGAIGGHHTCDICGKMFQYRYQLIVHRRYHGERKPFTCQACGQAFANHAELTRHGKCHIGGDRSKRMSQDKPYACTTCHKTFARKEHLDNHVRSHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCHICGKKYTRKEHLANHMRSHTNDTPFRCDLCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCSKSFTRKEHLTNHIRQHTGETPHKCTFCPKSFSRKEHLTNHVRQHTGDTPHACTYCSKTFSRKEHLVNHVRQHTGETPFKCTYCAKAFSRKEHLTNHVHLHTGETPHKCPYCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLKQHTGDTPHTCKVCSKPFTRKEHLVTHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKGAGAARPFRCDICAKDFLCKGHLVSHRRSHGEAATAEGVAATPAEGGPAEGARDAAEPVDDKCKVACEIQAHRHERKPLDSAPNERGPNEGNVTQNQANATVMQITNQVRSGGSSGGVSGSFARPAAAQHHAATAIAHHPVTVNY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -