Ejap016928.1
Basic Information
- Insect
- Eumeta japonica
- Gene Symbol
- -
- Assembly
- GCA_005406025.1
- Location
- BGZK01000275.1:315728-346427[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.3e-11 8e-08 33.6 0.0 4 39 357 393 354 397 0.89 2 4 5.4e-11 1.3e-07 32.9 0.3 2 39 409 446 408 449 0.92 3 4 3.5e-13 8.6e-10 39.9 0.0 2 45 464 508 463 508 0.95 4 4 1.6e-16 3.8e-13 50.6 0.0 1 38 515 553 515 557 0.93
Sequence Information
- Coding Sequence
- ATGGCTTCACTGTCTGGAAACCGTCCCAAACTGTTGGGCACTTTAAAGCCGGGCAGTCACTTTAGAATGCCTGGTATCGTCCGCCTTAGAGACGACAGATCTGATGGATATAGCGGTGCCTATGTGTTTATCAGAAATCATACTCCCTTTTCCCCGGTCGGCATCCCTGCCCATGGCGGTGGCTTCCAGGCAGTTGCCGTGAAGGTTGAGGGTACTACCTTCCTCTTCCTATACATTGCCTCACCTTCCTCCCTAATCCTAAATGAGTTAGAAGCAATCCTCTACACCCTTGACTTTGGTCGACATAATATGGATAAACTTGATCTTTTCATCCTGAACAATGGCATCCTAACGCGTCGATCTAGGCCGCATTCGAGTCCCACTGCATTGGACTTATCTTTCTGTTCTACTGATCTGGCCCCACTCCTGCCGTTGGAAGACGACCCCAGTGCTGATCTCCACTTCCTTTCCATAATAGAGAACGGTTGGTTGGGATGGCACACCATCTTTACTGACGCTTCTAAGTTCTCTGAAGCTGAATGCGACGAAATTGGTACATTCCACTCCCAATACAATATAGTTCAGAAAGTCAGACGCCCTCCCAAGAGCTCGCTGCCTATAGGATTTGAAGCCGGTCACATAAAATTGGAACCGACATTTGACTCGGAACAATGTGTGGTTTCTATCACACACGTCAATAGTTCTAGTTCTGTGCCTTCACATTTACTGCAGCATTTACAACAgCCCAGTGATGGACTTGAGGAACTCACTCCACTGGCACCAACTGCAACACCGGTGTGTGTCAAACCTGATCCAGATGAGCCTGCTGCACAGCTGGAGACTTTGGAATCCACACGACATACTTTGTCTGcgAGTTTAAGGCAAAATATGGGTAGACAAGCATTGCTGAATGGAACAGGTGCTGTTGAGTTTGCTCCATTATTACCAATTAAAGAAGAACCTATTGATGATGGAGATCAGCAGCATTTCAGTGGTGAAGATACCAATGACTCGTGCGGTGGAGGCGCTGAATCCGCCAAGTGCACTCCCAAGAGCTGGACGCAGCAGGATATGGAAAATGCGCTCGACGCTCTGAGGAACCATAACATGAGTCTTACTAAGGCATCGGCGCGGTATGGCATCCCCTCGACGACGCTGTGGCAACGTGCGCACCGCCTGGGTATTGACACGCCCAAGAAGGAGGGCACCGCCAAGAGCTGGAGCGAAGCGGATCTGCGTGGCGCTCTGCACGCATTGCGCGCAGGTGCCATATCTGCCAACAAAGCCAGCAAAGCCTATGGTATTCCAAGCAGTACATTATACAAGATAGCGCGGCGCGAGGGCATTCGGTTGGCAGCACCGTTCAACGCCGCACCTACGAGCTGGCGGCCCTCCGACTTAGAACGCGCGCTGCACTCCATCCGCTGTGGTCTTAGTTCCGTGCAGCGCGCTTCAACTCAGTATGGCATACCTACTGGTACGTTATATGGGCGATGTAAGCGCGAGGGCATCGAGTTGTCGCGGTCTAGCCCTGCGCCGTGGTCCGAAGACGCCATGGGCGAGGCACTCGAGGCAGTCagAGTGGGTCACATGTCCATAAACCAGGCGGCCATACATTATAATCTGCCATATTCATCATTATACGGCCGATTCAAGCGAATCAAATGTCAACCACAGATATCTCAAGCCATACATCAGTGTCCGGTTCAACACGAGGGTATGGATGCTGACCATCACAACCTAGAATCGTATCAACAGTACGCGCCTCATCACCTCCCGCATTCTTTTCACCAACACGATCCTCATTTTCAGAATATGGATCCTGGAACATTCGATATGGCTCAAGTCAATTCACATCTGCATGTGAACCAATACCACGATGCGGCGCAGTTAGAGCCATGTCCTGGGGTATATTACTCGAGTCAAAATGGCATAGCCACCAGTTGA
- Protein Sequence
- MASLSGNRPKLLGTLKPGSHFRMPGIVRLRDDRSDGYSGAYVFIRNHTPFSPVGIPAHGGGFQAVAVKVEGTTFLFLYIASPSSLILNELEAILYTLDFGRHNMDKLDLFILNNGILTRRSRPHSSPTALDLSFCSTDLAPLLPLEDDPSADLHFLSIIENGWLGWHTIFTDASKFSEAECDEIGTFHSQYNIVQKVRRPPKSSLPIGFEAGHIKLEPTFDSEQCVVSITHVNSSSSVPSHLLQHLQQPSDGLEELTPLAPTATPVCVKPDPDEPAAQLETLESTRHTLSASLRQNMGRQALLNGTGAVEFAPLLPIKEEPIDDGDQQHFSGEDTNDSCGGGAESAKCTPKSWTQQDMENALDALRNHNMSLTKASARYGIPSTTLWQRAHRLGIDTPKKEGTAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWRPSDLERALHSIRCGLSSVQRASTQYGIPTGTLYGRCKREGIELSRSSPAPWSEDAMGEALEAVRVGHMSINQAAIHYNLPYSSLYGRFKRIKCQPQISQAIHQCPVQHEGMDADHHNLESYQQYAPHHLPHSFHQHDPHFQNMDPGTFDMAQVNSHLHVNQYHDAAQLEPCPGVYYSSQNGIATS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -