Esab025024.1
Basic Information
- Insect
- Eumerus sabulonum
- Gene Symbol
- -
- Assembly
- GCA_951905685.1
- Location
- OX645062.1:55296605-55298624[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.27 48 5.8 0.2 2 23 222 244 221 244 0.89 2 12 0.0046 0.81 11.4 2.5 2 23 248 269 248 269 0.95 3 12 0.012 2.1 10.1 4.0 1 23 284 306 284 306 0.94 4 12 0.038 6.7 8.5 2.7 1 20 312 331 312 335 0.92 5 12 0.55 97 4.8 2.8 2 23 350 370 349 370 0.90 6 12 0.011 2 10.1 1.1 1 19 376 394 376 395 0.96 7 12 0.0012 0.22 13.2 5.5 1 23 403 426 403 426 0.96 8 12 2.8e-07 4.9e-05 24.7 0.6 1 23 433 455 433 455 0.99 9 12 1.2e-05 0.002 19.6 4.4 1 23 461 483 461 483 0.98 10 12 1.7e-05 0.003 19.0 4.5 1 23 489 512 489 512 0.97 11 12 0.00023 0.04 15.5 1.9 1 23 517 539 517 539 0.97 12 12 0.25 44 5.9 0.1 1 23 544 567 544 567 0.92
Sequence Information
- Coding Sequence
- ATGGAAGATCCACCTGACATTGAAGCTGTACTAAGTAAACTAGAGTCCACGTTACCAATATGCCGAGTCTGTCTTGATATATCCATGGAATACATTGAATTCGAAGGGCCCTTATGTGTCGTGAACGGCCAAGAAATAACTTATGCCGATGCTTTCAATGAGATGTCACCCTTTACACCTGATTTGCCCGACAAAACACCCACCAATTTTTGTGTAACCTGTGGCCAAGACTTACTTAATGCTTATATGTTTTTGAAACGAGTGGAAAATGCCAATGTTATTCTAAGTAAAGTGTATGTTTTATCTGAAGAAAATGCGAGACATGATGGAAAAGTACATGAACTCGATGAGGAAGTGCAGCAGGATTGCACGGAGAATCtgaaagtcgaaattcatgcaaATCTCTCAGATAATGAGCTCCCTCAGTTTATTGATTATGATGTTGATTCCAAAAGCGTGCCTAACACTGAAAGTGTAGATGAAGTCAAGCAATTATCAGAAAATCATGATAATGACTCTTTAGACACACGTACGAAAAGCAATTTACAAGAAGAAATGAATGATAAGTCGGAATCAAGTGCCGACCCCACCCCAAGCATCCGAGCAAGCTTGGATGACGAGAACAAGCTCGAAGAAGACTTTCCTGATGACTGTAGCGTTTGGATGTGCAACGAATGTGATGTTATATGTGAGACAGAAGAGCTTTTGGCCGAGCATAACGACAAAAATCATTTCTTGAACAGATGCATGcaatgccatcgaatatttTCCACGAGACAACAACTTGAAGGCCACTTACTATTCCATGAGTATTCTAAACTAATAGAAGCTTCCGCCGATAGAATGGTTCACCAGTGCATTTTGTGTAACAAGACTTGCCGTACCGAGAACGATTTCATTGATCACATGAACATGCATCGGGGTATTCAGCCACATATTTGCAACATATGCTTAAGTACTTTTCATACAAAGTACAATCTTCGTTTACACAGATGGCGCGTCCATACCACCGATGAGCTGAAGAAACGAAAACCCAAGGAATACGACAAGTGTCGGCATTGTCAGCGTTTTATTAAAATCTCCCAAATGGAGCGGCACATGGCGACGCATACGTCAGAGCGAAAATTCGCCTGTAGCCTTTGCGGCAATAAATTCTTCACGAAATACGGGTTAAAAACACATTCTCCAGCACACAAACAACGTGAATTCATTTGTCACATATGCAATAAAGTCTGCTACAAAGAGTTTACCTTACGGAAGCACATTCAATACATGCATTTTTCCGATCGCAAGAAATACCAATGCGAAGATTGTGGCCTTGTTTTTCAATACCCGTCCTATCTGAAAGATCATCAAAGAAAGCACGACACCAAAAGCAGATTTCAGTGCCCCCACTGCGATAGATCGTACTGCAGAAAACCTCAACTAGACATTCATCTGCGGTATCACAACAATGATTTCCCACACAAATGTGACCTGTGTGATAAGTGCTATGTGACAAAAAGCAACTTATTGGAACATGTCAAGTCTAGACACACGGAGTTTACGTACGATTGTGATGAATGTAATCAGAAGTTCAAATCGGTTACGGGGTTACGAAAGCATAAATACACCCACACGGGGTATCCGTACATATGTCCATTGTGCACCATTGGACAAACGTCGCGATCGGGgATGAAGGCTCACATGTTTGGTGTGCATCGTGATTCTGTAACTGAGGATGAGTTCAACGAGATGTTCCCAGTAATTATTCCAAAAAGTGGTTACCGTCGACCTAAAGCTTAG
- Protein Sequence
- MEDPPDIEAVLSKLESTLPICRVCLDISMEYIEFEGPLCVVNGQEITYADAFNEMSPFTPDLPDKTPTNFCVTCGQDLLNAYMFLKRVENANVILSKVYVLSEENARHDGKVHELDEEVQQDCTENLKVEIHANLSDNELPQFIDYDVDSKSVPNTESVDEVKQLSENHDNDSLDTRTKSNLQEEMNDKSESSADPTPSIRASLDDENKLEEDFPDDCSVWMCNECDVICETEELLAEHNDKNHFLNRCMQCHRIFSTRQQLEGHLLFHEYSKLIEASADRMVHQCILCNKTCRTENDFIDHMNMHRGIQPHICNICLSTFHTKYNLRLHRWRVHTTDELKKRKPKEYDKCRHCQRFIKISQMERHMATHTSERKFACSLCGNKFFTKYGLKTHSPAHKQREFICHICNKVCYKEFTLRKHIQYMHFSDRKKYQCEDCGLVFQYPSYLKDHQRKHDTKSRFQCPHCDRSYCRKPQLDIHLRYHNNDFPHKCDLCDKCYVTKSNLLEHVKSRHTEFTYDCDECNQKFKSVTGLRKHKYTHTGYPYICPLCTIGQTSRSGMKAHMFGVHRDSVTEDEFNEMFPVIIPKSGYRRPKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -