Esab035897.1
Basic Information
- Insect
- Eumerus sabulonum
- Gene Symbol
- -
- Assembly
- GCA_951905685.1
- Location
- OX645064.1:86898664-86902127[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0014 0.25 13.0 0.1 3 23 108 128 107 128 0.97 2 10 1.3e-06 0.00024 22.5 1.1 1 23 173 195 173 195 0.98 3 10 9.4e-05 0.017 16.7 0.5 1 21 200 220 200 221 0.94 4 10 0.0011 0.2 13.3 1.3 1 23 473 496 473 496 0.95 5 10 0.03 5.3 8.8 0.2 2 21 524 543 523 546 0.88 6 10 0.00051 0.09 14.4 0.7 1 21 558 578 558 579 0.96 7 10 4e-05 0.0071 17.9 1.2 3 23 589 609 587 609 0.95 8 10 1.2e-06 0.0002 22.7 4.2 1 23 615 637 615 637 0.98 9 10 4.6e-06 0.00081 20.8 1.7 1 23 643 665 643 665 0.98 10 10 2.7 4.7e+02 2.7 1.2 1 20 671 690 671 692 0.91
Sequence Information
- Coding Sequence
- ATGAATGGAGTCATGGAAGACGTTGTAATTAAACCCGAACCCCTGGACAGTGAATTTGCATCGATCAAAACCGAGGAGCTGATTATCAAAACTGAAGTTGACGATTCATCCCAGACAAATCACCCGGCTGTGCCTGTAGTTCCACCAAATATCCCATTCGTCACAATAATTCCAAAGACCGAAGCATTAGATGAGGACGTAAACCTCGCCGTAGAATTGCAACAGAATTCCTACCCACCGCCACCTCTTAGAACAAAGAATTTCGCCACCAAAAAGGTACAATCCATTTCGCGAAGCTTAAGATTTCGCAACGTGAACATTTGTCCGGTATGTAATCAAGTCTTCCGGACAAATGTGATTCTCCAGGATCACATACAACAGCACCGCCTTCAGGAAGCACAGAAATCCTCACCGAGTAAGGAGAAAACATCACCCAAATCACCCAAAACGCGTCGTAGTCTTCTCAAAACAATTCCAACGTCTCCCGACGTCAAATCACCCGAATTTCCCACGTTCTTTTCATGCAAAATCTGCGAGATGACATTCTCGAGTTCATATAGCCTACGCAGTCACGTACGCGTGCACAAAGGTAACAAACATGTTTGCGATCTATGCGGGCGGTCATTTACCTACGCCCTGGAGCTGAAACgacacaaaaaaggaaaagtttGTATGAAAGAGTCTTCCGAAGAGATCATAACCTTTCCCGAAATCGATATTAGTATTAAGAAAGAAGTTGAAAGTGATAATGAAGAAAACTCGATGCCTTCCATCGAAAATGGAATTGTACCTACAAAACTTGTTATTAAGGAAGAACCACTCGAAAGTGATATTCAGAATGTGCCAACATACCCCGTTAAGCAAGAACCCAACGATTCCGACGAGAATCAATCGTCGTCCGACTCGAGCCTGGACTATGAGGATCTTCTACTGAAGGAACTCATCGAGCGGAAAGCTAGATCTATTGCCAGTCAAAAGGCAGCCATGCAAAACCAAAACACCCTCGTTGCGAAGGTCATAACAGCTATCAAAGAGGAATCTTCTTCATCAGCAAATCCAAATCAGTCTGAGACTAAGCCTGTCGTTACACCAATGACGATTAAGCGGCAATTGACTAGCGAGTCCCTCTCCGACGATATGAATCACAGTTCCGCCACTCAAAGCAGTTCACATCAACCCGACGACTTTGAAGACATGATAGCTAGCAGTATACTGCCGAAATTCCAAAACAAGCGCGAGGTGATCAAAAATCTCAAGGAGGAGTACCAAAaggcaaagaagaagaaactccTCGACAGTGAGACACAGAATACAGAAATCCATGAATCAAAAGGTCTACGATCATTGTTCGTGACTTTGGGTAACGTTCCCGTGGATCTAACATTCAATTTGGGTAAAACTCTATATCGTTACGTGTTTATGTGCTCGCTGTGCCCGCGTCGTTATGTTCAACGACATGGCTTCATCAGACACATCGTAAGCACTCATACACAAAGTGTACTTGATCCCAATCAGCAAACCATTGAATTGCGTCCCGAAATGATTTCAACGAAACCAATACCGGATACATACTGTTCTATATGTCGGGTGACATTAGCCGATAGTGATTCACTTAAGAAACACAACGAAGAACTCCATAAACAGGATGGTACGCCGACTAGTACGCTGCAGTTTCAATGTGAAAAATGCGGTAAATACTGCTCGACTCGTGGTTTCTTGGCCGATCATATTCAAGCAAATTGTGGTAGGGAGCCACAGTATGGGTGTGATGAATGCGGGAAAAAGTTTTATACAAAGAGTACGCTGAATTTGCATAAAACGTTGCATACCGGTGTGCTGCCGCATAAGTGTGGATATTGTGAGAAGAGATTCCGTACAAAGGGTCAATTGACCGTACATACGAGGACACATACTGGGGAGAGGCCATTCCCGTGCAAGGTATGCGACCGTCGATTCACCCATCGCGAAACCCTTATCGCCCATCTCTCACGGCACATCGACATGAAACGCTACAAATGTTACGGCTGTTCCATGCTCTTCTCCTGTATATCAGGCCTGAAAACTCATCGCATTTCACGTCGAACAACATGCGGTCAAGTTAAACTAAACGCCCGCCCCGTTGGACCACGGGTCCGTGTCATTCGAGGCAACGTGATATTCGAACCGCAACCGAATATTAATCCATACTTCCGTCACACCGCCGACAAAGACACAAAGGAAAGCCAAAAGGACCAAGCCAACGAGAAAGACGAAATGAATCAGGAAAATCAAGAAAATGTCTTTAACGTCGCTTCCGAACCAATTGCGGAAACTGCGATGTGA
- Protein Sequence
- MNGVMEDVVIKPEPLDSEFASIKTEELIIKTEVDDSSQTNHPAVPVVPPNIPFVTIIPKTEALDEDVNLAVELQQNSYPPPPLRTKNFATKKVQSISRSLRFRNVNICPVCNQVFRTNVILQDHIQQHRLQEAQKSSPSKEKTSPKSPKTRRSLLKTIPTSPDVKSPEFPTFFSCKICEMTFSSSYSLRSHVRVHKGNKHVCDLCGRSFTYALELKRHKKGKVCMKESSEEIITFPEIDISIKKEVESDNEENSMPSIENGIVPTKLVIKEEPLESDIQNVPTYPVKQEPNDSDENQSSSDSSLDYEDLLLKELIERKARSIASQKAAMQNQNTLVAKVITAIKEESSSSANPNQSETKPVVTPMTIKRQLTSESLSDDMNHSSATQSSSHQPDDFEDMIASSILPKFQNKREVIKNLKEEYQKAKKKKLLDSETQNTEIHESKGLRSLFVTLGNVPVDLTFNLGKTLYRYVFMCSLCPRRYVQRHGFIRHIVSTHTQSVLDPNQQTIELRPEMISTKPIPDTYCSICRVTLADSDSLKKHNEELHKQDGTPTSTLQFQCEKCGKYCSTRGFLADHIQANCGREPQYGCDECGKKFYTKSTLNLHKTLHTGVLPHKCGYCEKRFRTKGQLTVHTRTHTGERPFPCKVCDRRFTHRETLIAHLSRHIDMKRYKCYGCSMLFSCISGLKTHRISRRTTCGQVKLNARPVGPRVRVIRGNVIFEPQPNINPYFRHTADKDTKESQKDQANEKDEMNQENQENVFNVASEPIAETAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -