Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.0019 1.8 9.8 0.3 14 38 162 183 155 188 0.84

2 6 2e-05 0.02 16.1 0.9 11 43 189 216 184 217 0.90

3 6 0.025 24 6.2 0.2 18 29 223 234 219 245 0.78

4 6 0.16 1.6e+02 3.6 0.7 18 39 251 269 247 272 0.85

5 6 0.098 94 4.3 1.2 16 37 277 295 273 300 0.77

6 6 0.0049 4.7 8.5 4.6 18 41 334 354 316 356 0.75

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.0019	1.8	9.8	0.3	14	38	162	183	155	188	0.84
2	6	2e-05	0.02	16.1	0.9	11	43	189	216	184	217	0.90
3	6	0.025	24	6.2	0.2	18	29	223	234	219	245	0.78
4	6	0.16	1.6e+02	3.6	0.7	18	39	251	269	247	272	0.85
5	6	0.098	94	4.3	1.2	16	37	277	295	273	300	0.77
6	6	0.0049	4.7	8.5	4.6	18	41	334	354	316	356	0.75

Coding Sequence: ATGATGACTGAAGAAGAACCAAGTTCCTTAATGAGACAAGCTTATGTGGAAAACAATAAACTCTATTCCAAGTTAGGAGATGTTTTCTTCACGACCGATTGCCAGTGTTTGTTTGTGTGTTCTGTATGTGACCTTGATTTCGAATTCTTCGATGTATTCATGGAGCACATAGGTGGAGATCATGATTTTCAGGATGCTTTCCAAAACAGCACGACAAAGAGGCTTGTGTGCATATCACATGTCGTGGGTAACACAACAAAGGGAATGGATTCCGAATTGATAGAGGTGGACACTAAGGAACTTATAGAATACAGAGATGAAAAGATACACGATGAAGGGGATGTTACCGGATCATTGCACCTAACACAGTATCTAGAGACGGGAATGAAATGTACGCGTTTTGACATTGAGAGAGTACAAAAAATCGACCTAAGCAGCACAAATAAGACTTTTGATTCGAATCAAATGGTCCGTCAGGTTGATCTACAGGAAAATAAGTGCGACCTTTGTGGAAAGAAGTTTGCAAGCGAAAATAATTTGGTGCGTCACAAATGGCGACATTCTAGTGAAACGAAGTGGTCGTGCCCAACATGCGGCAAGATAACAACCACCAAGGATGGCATGATTTTACATGTTCGTCGTAAACACACAGGTGAAAAACCCTTCAAGTGTAAATTTTGTGAGAAATCATTTGCCTCTACATCACAAAGAAATCTTCACCATCGTGTACATACCGGATATAAGCCGTATGTTTGTGAAAAATGTGGTAAAAGTTTCAAATTGCACACCGTTCTACGATACCACATGAATTGGCATCTGGGAATAAAGAATTACAAATGCGATAAATGTGAAAAGACCTTTCATTCAACGAGTGAATTAAATAACCATAAAAGCGTGCATACATGGGAAAGACCATTTGCTTGTCCAAATTGCAGTCTTCGATTTAAGACCAAAAGGCACCTACTACGGCACACAGAAGTGCACAGTGGAAAACTAAAAATGTGTAGGTACTGTAACAAAGGGTTTGCCCATATTTCGACACTTACGTCGCATTTAAGGCAGCATCAATTAGATGAAATGTAG
Protein Sequence: MMTEEEPSSLMRQAYVENNKLYSKLGDVFFTTDCQCLFVCSVCDLDFEFFDVFMEHIGGDHDFQDAFQNSTTKRLVCISHVVGNTTKGMDSELIEVDTKELIEYRDEKIHDEGDVTGSLHLTQYLETGMKCTRFDIERVQKIDLSSTNKTFDSNQMVRQVDLQENKCDLCGKKFASENNLVRHKWRHSSETKWSCPTCGKITTTKDGMILHVRRKHTGEKPFKCKFCEKSFASTSQRNLHHRVHTGYKPYVCEKCGKSFKLHTVLRYHMNWHLGIKNYKCDKCEKTFHSTSELNNHKSVHTWERPFACPNCSLRFKTKRHLLRHTEVHSGKLKMCRYCNKGFAHISTLTSHLRQHQLDEM

Sequence clustering based on sequence similarity using MMseqs2