Eata010904.1
Basic Information
- Insect
- Eumaeus atala
- Gene Symbol
- -
- Assembly
- GCA_017140195.1
- Location
- JAOYMN010000538.1:1-3109[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2.8 2.5e+02 2.8 3.0 9 23 1 15 1 15 0.95 2 21 0.035 3.1 8.8 1.8 2 23 27 48 26 48 0.96 3 21 0.002 0.17 12.7 0.7 1 23 58 80 58 80 0.98 4 21 0.041 3.6 8.6 3.2 1 23 109 131 109 131 0.96 5 21 7e-05 0.0062 17.3 2.0 1 23 142 164 142 164 0.98 6 21 0.0015 0.13 13.1 0.4 1 23 172 194 172 194 0.97 7 21 0.00028 0.025 15.4 0.2 2 23 214 236 213 236 0.97 8 21 4.9 4.3e+02 2.0 0.2 1 10 254 263 254 272 0.93 9 21 0.042 3.7 8.5 3.7 1 23 283 305 283 305 0.97 10 21 0.00075 0.066 14.1 0.8 2 23 316 338 315 338 0.95 11 21 0.0013 0.11 13.3 0.2 2 23 361 382 360 382 0.95 12 21 0.081 7.1 7.7 1.0 2 20 386 404 385 405 0.93 13 21 1.1 99 4.1 3.3 2 23 425 447 424 447 0.95 14 21 0.00098 0.086 13.7 0.2 2 23 463 484 462 484 0.95 15 21 1.2 1.1e+02 4.0 2.8 5 23 494 512 491 512 0.93 16 21 0.0055 0.49 11.3 0.9 2 23 523 545 522 545 0.95 17 21 0.33 29 5.7 5.4 2 23 562 580 562 580 0.90 18 21 0.72 63 4.7 2.2 2 23 624 645 624 645 0.96 19 21 0.095 8.4 7.4 2.8 2 23 652 673 651 673 0.95 20 21 0.00079 0.07 14.0 0.4 2 23 684 706 683 706 0.96 21 21 1 90 4.2 2.3 2 16 744 758 743 764 0.82
Sequence Information
- Coding Sequence
- TCGTTCAAATTCCAGCGCCACTACAAGCTGCACATGCGCGAACACTACACCGACACCAACCTCGACCCCAAGCACCTCACGTGCTCCATATGCAATCGCAAGAGCAAGCACCTTCGCGCTGCTCAGGCGCACATGAACTTCCACAAACAGACTCGATTCAAAAACAAAGACTACGAGTGTTCCATTTGCAAACGCGTTTTTCAATACCGTAAGGTATACCTCTCTCACATGGCTGTTCACTTTAAGAAAGGCGACAGCGCCGTTAATACCGTGGTCGGCTCCGTACTGCCGACTACGGCGGACAAAAACGTTTTCGACGGGAAACACACGTGTCATCTGTGCGGCAATGTTAGCGATTCTGAAAACTCTCTTAAACACCATCTCATTTGGCACAAGTCGAAAACTGTTCTGTTCGGTGCAAGGCATGAGTGCGACATTTGTACTATAGTGTTCACTAATAAGAGAAGGTTAGAACTTCATTATAGAACGCATTTTGAGAATGATGACGGCCCGTTTAAGTGCAATATTTGCGGCAAAGGATATATTGCAGAAGAGTTCTATAAGAAACACGTAAAAGGACACAACTTTGACAATCAGTCTCATAAAAAGCGAATCGAGAAACTTAGGAAGGATAAAGTGAAATGTCCTATTTGCTCACGTTATTATCCTGATTTGGTAAAGCTTATTCGTCACTTACGACGCACTCATCCCGAGAGCAAAATGATAAAAGAGGATCCCGACGCCCCTCCACCGAGTTATTATTCTTGTAAACTTTGTGCCAAGGTTTTCTTGGACGAAAGAAGATTGCAATTTCACGAGGAAGCCCATTTGAGGAAGCCAGAGTTTTTCAAATGTAAATTTTGCGGTAAAAAAACCATATCCTTGAAAAATCATAGAGTTCACATTAAGGGGCATTTAACACAGAAATATTTCGACAATCCACTCAAATGTCCGAACTGTGAGGAGACATTCAACAGGGGGTATGACCTGCACTATCACCTTCGAGACGTTCACGGCATTAACGAAACTTGGGTCGCCGAACGCGGCACCGAAACTTTGAATGGTCCTTTAAAGAAACTTCAATGTTCCATTTGTTACAAGATTTTAGCCAGCAAAGGTAACTACGAGAGGCACATAGACTACCACAACACACTGCGCTGCAACTACTGCTTTGAATTCTTCACCACACATAGATTTTTAGAAGGCCATCTTGCGTTCAGTTGCGAGAAAAAGAAACTGCTGGGTGATACTGAAATTTACCCGAAAAAAGTCAAATGCGAGGAATGCTACAAAGCTTTCCACCTACAGGTGAAATTAGATTGTCATATGAGAATCAAGCATGGTATCAAAGTGTTTAAAGAGGAATATGTTGGGAGGAAGGAGATAGTTTGTGAATATTGCTTTAAAGTATTTGAAAATGAGTATGCATTAAGTACTCACAAGATATATCATCGCACCATTGGCTACTATGGCTGTATATACTGTGCTAGAAAATTCAACACACTAACAGCGTACAAAAAACACAAAAATCACCATTTTTCGCAACTTAATGTTGACAACCCTACTAAATGTGAGCATTGTGACCAAACTTTCGTCGCCTTCAGGGAGATGATATACCACATGCGCGGCGTTCACGGAGACGACAAAGAGTGGATCGTACAGCCAAAGGAATCCATCGAAGAAAAATGCCCAATATGCCACAAGACTTTCTTCAATCTTCACAGACACCTGGATTATCATGAAGAAAACAGGTGTAAAAAGTGTGGCGAATATTTTTACTCGACCATAGAATGCGACAATCATTTGTGTGCAATCGACAGTGATGATGAAACTACAGAAAACTTAACGGATCTGCGTCCTAAATATGAGGAGTGTAGCTTCTGCTTCAAACCAACTACCAAAAAGAATTCCCAGAAAAAGCACGAGCTCATTCACAAAGGTTCAGGATCAATATCATGTCGATTCTGTAATCACAAATTCAAAACTATGGATGCATTTAACATACACGCTTTCACACACAGAAACAGAAAGTACAAATTGAAACCTATAAAATGTAAGAAATGCGGCGAACAGTTCGTAAAGTATGGTCCATTTATAAAGCACATGAATAATGTCCATAAAAGTGTCAAAAAACTTCACTACAGGGCCACCGTTATGGCCGAGCCGTGCGTCGTGTGCGCCGAAGATTTCCCCAACTTGCACAACCACTACCGGGCTCATCTGCAGAACCAGTGCCAGCAGTGCAATAAGTACTTCACCTCGAGTCGTGTGTTTGGTTTGCATAAATGTGATAAAGAAGACTTGGATCCTACGAAAGTATTCACTTCGGATGCTGATCTGGTTAAACTTATCAACGAGTATGTCCCTAAAGATGAAAAAGACGATGAAAAATACTATGGCTTTGACAACGACGAGGATGACGAGGTCGAGGAACCCAAAGAACAAGCAAAACAACTGCAAGGCAGCATACTACAGCAAGGAAGCACGCCAGGCCACAGACAATATCCAGGCCTCAAACAATATAAAGGCCCCAATCAAAAAATGAGAACCTCTGGTCAAATTTCACAGGACGACGAAAGCCAAAACTCCGTGGACCCCGATGAGGGTGAGCTCCACGAGATGGTTCATGCTCCAATAATATCAGACGTGTTATCTCTATACTGCAAGAAAGAAGACAAGAAAAAAGATGAAGGCGATGAAAGCGATGTGGTTATTTTAACTGATGATGATTCCAATGGTTTGGAAAAAGTAGTCCCCGTTGTAGTGATAGATGATGATTAA
- Protein Sequence
- SFKFQRHYKLHMREHYTDTNLDPKHLTCSICNRKSKHLRAAQAHMNFHKQTRFKNKDYECSICKRVFQYRKVYLSHMAVHFKKGDSAVNTVVGSVLPTTADKNVFDGKHTCHLCGNVSDSENSLKHHLIWHKSKTVLFGARHECDICTIVFTNKRRLELHYRTHFENDDGPFKCNICGKGYIAEEFYKKHVKGHNFDNQSHKKRIEKLRKDKVKCPICSRYYPDLVKLIRHLRRTHPESKMIKEDPDAPPPSYYSCKLCAKVFLDERRLQFHEEAHLRKPEFFKCKFCGKKTISLKNHRVHIKGHLTQKYFDNPLKCPNCEETFNRGYDLHYHLRDVHGINETWVAERGTETLNGPLKKLQCSICYKILASKGNYERHIDYHNTLRCNYCFEFFTTHRFLEGHLAFSCEKKKLLGDTEIYPKKVKCEECYKAFHLQVKLDCHMRIKHGIKVFKEEYVGRKEIVCEYCFKVFENEYALSTHKIYHRTIGYYGCIYCARKFNTLTAYKKHKNHHFSQLNVDNPTKCEHCDQTFVAFREMIYHMRGVHGDDKEWIVQPKESIEEKCPICHKTFFNLHRHLDYHEENRCKKCGEYFYSTIECDNHLCAIDSDDETTENLTDLRPKYEECSFCFKPTTKKNSQKKHELIHKGSGSISCRFCNHKFKTMDAFNIHAFTHRNRKYKLKPIKCKKCGEQFVKYGPFIKHMNNVHKSVKKLHYRATVMAEPCVVCAEDFPNLHNHYRAHLQNQCQQCNKYFTSSRVFGLHKCDKEDLDPTKVFTSDADLVKLINEYVPKDEKDDEKYYGFDNDEDDEVEEPKEQAKQLQGSILQQGSTPGHRQYPGLKQYKGPNQKMRTSGQISQDDESQNSVDPDEGELHEMVHAPIISDVLSLYCKKEDKKKDEGDESDVVILTDDDSNGLEKVVPVVVIDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -