Eata001844.1
Basic Information
- Insect
- Eumaeus atala
- Gene Symbol
- -
- Assembly
- GCA_017140195.1
- Location
- JAOYMN010000014.1:993397-1000897[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.3 2.9e+02 2.6 1.4 2 23 220 242 219 242 0.91 2 11 7 6.1e+02 1.6 1.3 2 23 250 270 249 270 0.84 3 11 0.29 26 5.9 0.5 1 23 274 297 274 297 0.93 4 11 0.00069 0.06 14.2 2.0 1 23 339 362 339 362 0.97 5 11 1.1e-05 0.00094 19.9 1.0 1 23 366 388 366 388 0.97 6 11 0.0029 0.25 12.2 0.1 2 23 396 416 396 416 0.98 7 11 0.026 2.3 9.2 0.6 1 21 422 442 422 447 0.92 8 11 0.00017 0.015 16.1 0.9 1 23 455 478 455 478 0.95 9 11 0.0011 0.097 13.5 4.2 1 23 484 507 484 508 0.97 10 11 4.2e-05 0.0037 18.0 0.3 3 23 519 539 518 539 0.96 11 11 1.6e-06 0.00014 22.5 1.1 2 23 546 568 545 568 0.96
Sequence Information
- Coding Sequence
- ATGGAGGCATTTGCAGAAAATGTTCTAAAAACAGTATGCTGTACATGTTTAAGTGTTGATAGAAAACTTTCTCAACTGTGTAGAATTCTAAATGGTGTCAATAATTTATACCACTTACTCTCTTACGACGCAGAAGCGTATAGAGAAGTGTTTTTTAAAGGTGCAGCAAATTTATTTGTATGTTGGGAATGTATAACATTGATGAAAAAGTTTATCAAATTCAGAGAGCAAGTGTGCACTGCTCAAAAACAACTATCAATAGTAGACGATGAATGTAAGGTTCATTCAAGATGGAAACCTCTATCTAGATTGACTAAATATCACAAAAATGAATTCGACAAATTTTTCATATCCAGATGTAACTCAGATTTTGATCATGATAATTTTGTTGACTGCGGCTCATTTATTGATATTAAGACTGATAGTGACACAGATGATATGCCCCTCTCTAAATTACATTTTAGTGAAATAAGAACTGTAAACCAACCTAAAGAATATGTTTGTATTGAAAGCAAGGAAAAGACAAATGCAAATAAAAAAGAATGTAATAATATGGTCCCCAAGGTCTTTTCCTCAACAACTGAAATAAAAGCGGGTGATCTAATGCAGTGTAATGACAAAAAGAGGTTAGATGAAAGTTTTGTGGCAGCTTTATGGAAATGCTTACATTGCATAGAGGTCTTTGGAAGTGATATATCATTGAAAAAACATAATACAAAATTTCATAATGCAAAGCCGAAACATACAAAATGTGAGGTGTGCCACATGTATATAAGGAATTCAATGATAAAAGCTCATAGAAGCGAGCACTACACAATACATACATGCGTCTACTGTGACTACATATCGTCTGCGCTCCCGGACATGACAAAGCATTTGCAAGACAATCACATTATAGGTGAGGAAATGTCCCGTGAATTGAAAAAGATGTTGCGGAAAACGGGCACTGGGAAAAGGTGTAGCTCGAAGCCGCGACGCAAGCCCGCCATGCTGGACAAGCGCACGCCGTTCGGCTTCCCCTGTACGGAGTGCGACAAATATTTCGACAACAAGAACAAAAGATACAAGCACATACAGCGCGTGCACAGGGAGGGCTTCAAGTGCGCCACATGCGGCAAGCGCTTCGCCTTCCGGAGCACCCTGGCCAGACATGAGCAGTTACACTCGGGCCCGCTACCTCGCGAGCAGTGTCCAATTTGCGGGAAAATGGTGCGTAGCGACTTAGCTCGGACGCACGCACGCACACATACGAAACGTGACACATTTGCGTGCGCGGCGTGCGAAAAGAATTTCGTGTCGCGCGCATCCTACGAGCACCACCTCAAGTACACCCAGCCGCACGCGACACACGATATAATGAAGCATAAATGTGCGCAGTGTCCGAAAGGTTATCGGTCCCAGGCTGAGCTGAGGGACCACGTCAACTATCAGCACATGGGCCGCACGCAGCACAAGTGCCCCATCTGTGATAAGGCGCTAGCGACGCGTCGCTGCATCACGAGGCACGTGCGGCGCGCGCACCACGGCGTGAAGGAGTGCGCGCGCGACAAGATCTGCCAAACCTGCGGGAAGGCTTTCAGGGATAAGAAAGGTCTCCGCGAGCACGAGTCAATTCACGCGGGCACGCGACCGCTGTCGTGCACCGAGTGCGGGCGCACGTTCCGCCAGAGCGCTTCACTGTACACGCACCGGCGTCGCGTGCACAACGTGGCTCCGTCCCGCCTTGTCCTCGCGCACACTACAGCTCAAGATACCTGA
- Protein Sequence
- MEAFAENVLKTVCCTCLSVDRKLSQLCRILNGVNNLYHLLSYDAEAYREVFFKGAANLFVCWECITLMKKFIKFREQVCTAQKQLSIVDDECKVHSRWKPLSRLTKYHKNEFDKFFISRCNSDFDHDNFVDCGSFIDIKTDSDTDDMPLSKLHFSEIRTVNQPKEYVCIESKEKTNANKKECNNMVPKVFSSTTEIKAGDLMQCNDKKRLDESFVAALWKCLHCIEVFGSDISLKKHNTKFHNAKPKHTKCEVCHMYIRNSMIKAHRSEHYTIHTCVYCDYISSALPDMTKHLQDNHIIGEEMSRELKKMLRKTGTGKRCSSKPRRKPAMLDKRTPFGFPCTECDKYFDNKNKRYKHIQRVHREGFKCATCGKRFAFRSTLARHEQLHSGPLPREQCPICGKMVRSDLARTHARTHTKRDTFACAACEKNFVSRASYEHHLKYTQPHATHDIMKHKCAQCPKGYRSQAELRDHVNYQHMGRTQHKCPICDKALATRRCITRHVRRAHHGVKECARDKICQTCGKAFRDKKGLREHESIHAGTRPLSCTECGRTFRQSASLYTHRRRVHNVAPSRLVLAHTTAQDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -