Eata017021.1
Basic Information
- Insect
- Eumaeus atala
- Gene Symbol
- -
- Assembly
- GCA_017140195.1
- Location
- JAOYMN010001235.1:32271-38339[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.54 48 5.1 0.9 1 23 168 189 168 189 0.95 2 11 0.013 1.1 10.2 0.1 3 23 195 215 195 215 0.97 3 11 0.0077 0.68 10.9 1.0 3 23 223 244 221 244 0.92 4 11 0.00017 0.015 16.1 1.0 2 20 254 272 253 276 0.91 5 11 0.0033 0.29 12.0 1.9 1 23 281 304 281 304 0.98 6 11 0.00021 0.019 15.8 0.7 1 23 310 333 310 333 0.96 7 11 0.11 9.5 7.3 3.3 2 21 339 358 338 359 0.92 8 11 0.0035 0.31 11.9 0.1 2 23 365 386 364 386 0.96 9 11 0.00062 0.055 14.3 0.9 1 23 392 414 392 414 0.98 10 11 1.3e-05 0.0011 19.6 1.0 3 23 422 442 421 442 0.98 11 11 7e-07 6.2e-05 23.6 0.5 1 23 448 470 448 470 0.98
Sequence Information
- Coding Sequence
- ATGAAGTGCAGAGCTTGCTTAAAAATTGGCCATGTAAATACTTCTCCACTGGATGAATATTATGTTATATGCTTCAATTTGATCACTACTTTAAATATTAAGCTAGGAGATAATAAGCCCCAACAACTCTGTGAAAACTGTTTAGGAGATCTCATACGTTGTATTTCCTTTAGAGAAAAATGTATTTATTCAAACTCCAAATTAGTTGAAACTGTATCAATTGAGGAAACTACAACAAAGTCACAGGAGCTGAGACATATAAAAGTAGAGGATAATAATATAAACTTCGAAATTGATTGCATTGAGAAATTAGTAATAGAAGGAGAAGAGATAGATAAAACTGAACTTGACGAGGCCTCTGATGTAGACAATTTTAAATATGAATATGCTGAAGGTACTAAAGACTCATCAAACTTTGAGGAACAGTCTATTGAGAAAACAGAAAAGAAACAAGAAGAATCAAATATAAATAAAGAAAAATCATATAAATCTGTCATTGTTTATGACTGTGGTCTGTGTAAGGAACAATGTACAAAAGGCGACTTATATGATCACGTAGAAAGTCACAAGAGCAGTAAATGGTGTCCAATATGTGACAAGGAGTTCCTGGAGTGGTCGTTGTTGTCACTTCACAGGGTAAAACATTTACCCACCACAAGGTTATTTTGTCATATTTGTTTTAAGTATGTGAAAACACCAGCGTCACTCGAGGTTCATTACAGTCTCAAACATATGCGCAAAAATCCTAAAAGTGTTTTACAATGTCAACAATGTACTAAGAGCTACACGACACTCCGAGGTCTGCAGAAGCACATGTGGACGATGCACTCGGGTCAGACTTACGTATGCGATATCTGTAATAAAGAATATAACTGCAAGAAAATGTTAGTGTACCACATAAAGACGTGGCATGCACCCAGAACCACGTACCGTTGTAAGGAGTGTGACTTTATAAGCAAGTTCCCCGGCAACTTAAAGCAACACATAATAAACAAACACACTCCAGGCAGAGTGTACTGTAGCAAGTGCAAGACTTCGTACGAGAACCAGAGCAAGTTCCAGGGGCACAAGTGCCGCAAGCGCCTCCCCACGGTGTGTCCCATCTGCGGCATTGTGCTGAGCCCACACGCACGGTTGAACCGGCACCTCGTTATGCACACGACGGAGCGCCAGTTCAAGTGCACCCGCTGCCCCGCCAGCTACAAGAGCAAGACCGCGCTGGACACGCACCTGGACAAGCACGACGGGCGCCGCACGCGCCACTGCGAGTACTGTCCTGCCAGCTTCTACGAGCAGAGCGCGCTCATCCGCCACCGCCGGACGCACACCGGTGAGAAACCATATGTTTGTAAGATTTGTCAAAAAGCGTTCGCGGGTCTCCACAACCTAAAGGTTCACATGCAGGTTCACGGGGAATTCCTTATAAAGAAGAAGTCTATGGAGAATAGCATGGAGAGTGTTAGGGAAATATTTAAACCTTCTCCTTGTAAAATGTTCAAACGCGGTAAAAGTGTTGTTACAAAGTAA
- Protein Sequence
- MKCRACLKIGHVNTSPLDEYYVICFNLITTLNIKLGDNKPQQLCENCLGDLIRCISFREKCIYSNSKLVETVSIEETTTKSQELRHIKVEDNNINFEIDCIEKLVIEGEEIDKTELDEASDVDNFKYEYAEGTKDSSNFEEQSIEKTEKKQEESNINKEKSYKSVIVYDCGLCKEQCTKGDLYDHVESHKSSKWCPICDKEFLEWSLLSLHRVKHLPTTRLFCHICFKYVKTPASLEVHYSLKHMRKNPKSVLQCQQCTKSYTTLRGLQKHMWTMHSGQTYVCDICNKEYNCKKMLVYHIKTWHAPRTTYRCKECDFISKFPGNLKQHIINKHTPGRVYCSKCKTSYENQSKFQGHKCRKRLPTVCPICGIVLSPHARLNRHLVMHTTERQFKCTRCPASYKSKTALDTHLDKHDGRRTRHCEYCPASFYEQSALIRHRRTHTGEKPYVCKICQKAFAGLHNLKVHMQVHGEFLIKKKSMENSMESVREIFKPSPCKMFKRGKSVVTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -