Eata005715.2
Basic Information
- Insect
- Eumaeus atala
- Gene Symbol
- -
- Assembly
- GCA_017140195.1
- Location
- JAOYMN010001332.1:25-11153[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00018 0.015 16.0 3.4 1 23 235 257 235 257 0.98 2 10 0.00012 0.011 16.6 6.6 1 23 263 285 263 285 0.96 3 10 0.0012 0.1 13.5 6.9 1 23 291 313 291 313 0.98 4 10 0.00086 0.076 13.9 1.0 1 23 319 341 319 341 0.96 5 10 4.8e-06 0.00042 21.0 0.9 1 23 347 369 347 369 0.97 6 10 3.2e-06 0.00028 21.5 0.0 1 23 375 397 375 397 0.98 7 10 3e-05 0.0027 18.4 0.3 1 23 402 424 402 424 0.96 8 10 0.94 83 4.3 3.3 3 19 432 448 431 454 0.90 9 10 1.9e-05 0.0016 19.1 0.4 1 23 539 561 539 561 0.97 10 10 0.0027 0.24 12.3 0.9 1 22 630 651 630 651 0.93
Sequence Information
- Coding Sequence
- ATGTGTATGCCAACGCCAAGCAATGTCTCGGGTTTCGGTTATTCTTGGGGATTTTCGAGCACGGCCGACCCTACAAAGTGTGAAGTAGATACTCCGAACAGCTTAAGTTACACTTTAGGGAATACAGTTTCACCTGAAACAACTTTGACTGTTATGTCACATAAGACACCACAAGTTCAAGAAAAAGTAGGTGCATTAGCGGTTACTGTATCAGCAAATTCAGCAGCTCAGGTCACAAGGGTTGTGACATCTGGTATGCCAATTGCAGGTCGAAAAGCCATGTTTGTTCTCAACGAGTCACCTCATAGCCTTCACCATAAGAACCCACAACAAAGTCAAACTACAACAATACAGACAGCAAACCTTGCGTCCAAGCCATTTATGACACCCATCGGTCCAATACAATTAACAGCTGAAGAATGCAACGAAATACTAATGAAAAGGGCTCTCCAAGCTCAGGGGATAGCAACTCCTGTAATAGATGCTTCACAGCTTAATCACACTTTGCTAAATGGAGGGTTGAAGAGCTTAGCAGATGCAACGACCCAGCAACAGACAGAAACAATACAAACAAGTGTCCCTCAACATCATCTGATACATGCAAAACAGGAACCTGGAACTACAAACAATTCTCCTAAAACGGAGATCATGACGAACACGGTCATGGCTACAGCGGCGCCCCAAGTGGTGAAGgagcggccgtactcgtgcgaggagtgcggcaagtcatttctactcaagcatcacctcactactcacgcgagagtgcacactgGTGAgaggccccatgtctgcgggcactgcgggaaggcgttcgctcggaaacactgtctcaacacgcacctgctgctgcactctgcggaccggccctaccgctgccacgagtgtaagatggccttcacgctgaaacaccatctggtcacacattcaagggtgcacagtcgcgaccggcccttcatatgcggcgagtgcgggcgagggttcccgctgaagcggcacctcgtgacgcacagcaagtaccacgcgggcgagcggccctacgtgtgcaacgagtgcggcgagagcttcgcgcagaagGAGCACCTGGTGATGCACAGCCGGTTCCACGGCTCGCTCTCgccgttcgtgtgtccggactgcggagtagcattcgccaggaagttccagctggtcaaccacgggcgggtgcacggcagggtgcctcacgcctgtccggtctgcggcaaggagttcctacagaagaggacgctggccgcgcacatgAAAATACACACcggggaaggtgcggtagcatgtctggagtgtggcgaggcgttcaagtgcaagtcggaattgctgcagcactgcaagatgacgaggcactgcctcagtatgtcacagacccagcagcagcaacaggcgcaagtccagcagcagcaggcgcagcagcaacaagtacaggcccagcaacaacagcagcagcaacaacaacaacaacaacaacagcagcaacagcaacaacaacaacaacaacaacaacagactactgttatcaaacaagatgattttAAGCCACAAATAGTGCAGGTCATTGGAGCCGATGGGCAGATAATTTCGGAAAAGGCCACACCAGGCTATGCTTGTCCAGAGTGTGGCTCATGTTTTAACACAAAGGAGGCGCTGTCACTTCACGTGCGACTGCACGCGGGCGACCGCACGTGCGTCACGGACCTGTGCGCGCTCACCGCGGCGCTGCAGCCCGGCCTCGTCGCCGCGCACCATGCCACGCACAGTCAGTACTCGCTTCATCAACCAATACAGATAATTGCATCCAATCCAAATAGTAATGTAGTCCACACACAAGTTATTGCCACGAATCATCATATAACACCACCAAGACCAAAGTTACATTTTTGTGTTGACTGTGGTAAAGGGTTTGCAGCTAAGCATGGCCTTCTAGCACACCACAGAAGGTAA
- Protein Sequence
- MCMPTPSNVSGFGYSWGFSSTADPTKCEVDTPNSLSYTLGNTVSPETTLTVMSHKTPQVQEKVGALAVTVSANSAAQVTRVVTSGMPIAGRKAMFVLNESPHSLHHKNPQQSQTTTIQTANLASKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTLLNGGLKSLADATTQQQTETIQTSVPQHHLIHAKQEPGTTNNSPKTEIMTNTVMATAAPQVVKERPYSCEECGKSFLLKHHLTTHARVHTGERPHVCGHCGKAFARKHCLNTHLLLHSADRPYRCHECKMAFTLKHHLVTHSRVHSRDRPFICGECGRGFPLKRHLVTHSKYHAGERPYVCNECGESFAQKEHLVMHSRFHGSLSPFVCPDCGVAFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLAAHMKIHTGEGAVACLECGEAFKCKSELLQHCKMTRHCLSMSQTQQQQQAQVQQQQAQQQQVQAQQQQQQQQQQQQQQQQQQQQQQQQQQTTVIKQDDFKPQIVQVIGADGQIISEKATPGYACPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAHHATHSQYSLHQPIQIIASNPNSNVVHTQVIATNHHITPPRPKLHFCVDCGKGFAAKHGLLAHHRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01282625;
- 90% Identity
- iTF_00744989;
- 80% Identity
- -