Eata022351.1
Basic Information
- Insect
- Eumaeus atala
- Gene Symbol
- ZNF407
- Assembly
- GCA_017140195.1
- Location
- JAOYMN010041148.1:3726-13872[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.28 25 5.9 2.7 1 23 233 255 233 255 0.98 2 11 0.00086 0.076 13.9 1.1 1 23 262 284 262 284 0.98 3 11 0.13 11 7.0 1.3 1 23 288 310 288 311 0.92 4 11 5.9e-06 0.00052 20.7 2.0 1 23 319 342 319 342 0.94 5 11 3.5e-05 0.0031 18.2 1.6 2 23 349 371 349 371 0.95 6 11 1.2e-07 1.1e-05 26.0 0.3 1 23 385 407 385 407 0.98 7 11 2.3e-05 0.002 18.8 0.2 1 22 413 434 413 438 0.94 8 11 3.1e-05 0.0027 18.4 2.6 3 23 448 469 448 469 0.97 9 11 0.0069 0.61 11.0 0.6 1 23 475 498 475 498 0.95 10 11 3e-07 2.7e-05 24.7 0.3 1 23 507 529 507 529 0.99 11 11 0.04 3.5 8.6 0.1 1 23 535 558 535 558 0.94
Sequence Information
- Coding Sequence
- ATGAATCGAATGAAAACTACTGTAAATAAGTGCTGTATAAACTGTTTATTATTAGATGAAAATATTATCCAATGCTACCAAATAAAAAACGAAATGTTAAAAACTATATTTCAGGGAGATAATTTAAGTCTGTGTTATGTCTGCCTAAAAATAATATCTAATGCTGAGGCCTTCATTCAGAATGTTCAGAGTAACCAAATATACTTGGAGAACTATGATCATATTACAGAATCAATACTTGAAACAGCAAAATTGCAATTGCAACCAATCACAACTCTGTCTAATGCAACGCTAAGCATAATAGAAGTAAATGAAAATGAGATCAAGGATGATACATTTGTTGTTTATTATACGGGTAATGCAAGGAATGAATCTGTTAAGCTAGAGGTGAAAGAAGAATTTATGGATTATTTAGATGAAGATGTACATCAAAATAGTGAGGATGACGCTCATATAAAAGAAGATGACTATGATGTTCCTTTAATATCTTTAAAAGAATCTTCAACACTAGAGAAAACAAAATTAAAGCAGATAAAAAAAGTGAAAGTGAAAAAAAAGCATGCTAAAGAGAAAGCCTGTGATATTGTTAAAGGGAAAAGTGCAATATGTGGTTTTGAAACTATACGTTTAACCAAAGAACAGTGTATGGAAGAACGTGAAAATATGGCCAACAATAAAAAGTTCATATCAGCATTTTACAAGTGTACCGACTGTGTGAAATGGTTTGCTTGCAAGAATGGCTACGAGAAACATATGGAGAAACATGACAAGGTGAGTGGCGAGTACAGATGCGACGTGTGCCAGCAACGGCGCGACTCCGCCGACAAGCTGATGAAGCACCTGCGCTACCACTCGCTTAGGTACAGGTGCAACGTGTGCGGGCTGACCCGCATCAGCCGGCTGACGATGCAGGACCACTACACCGCGCACCACGTGGAGGGGCCCGCCGGACACTTCGCCTGCTCGCACTGTGTTAAGAGTTTCAAGCGGCAGGTTTCATTAAGAAAACATATCGAATATGCTCACAGCAAGAAGACGCCGGCTCAATGTAACATTTGCAATAAAATCTATAGGTCAAAGGAAACGCTTAAAGCGCATTTGTTTAGAAAGCACCTCTCAGAAATGTCGGCCGGGGAGGTCCCGCACAAAAGCTACGAGTGTGATCAATGTGGCAAGGCGTTCAGAGCTCCGTCGCAGTTACGGAACCACATGAGCAAGCACTCGGCCATCAGGAACTACTACTGCGTCGAGTGTGACAAAAGTTTCAAGTCGGACATGTCACTGAAGCAGCACTTGAGGATAGCGGCGCCGCACGTCAACTACATGGAGCTGCCACTCGGCTGTGATCAGTGCGACAAGAGGTTCAACACGCGCCGCGACTTGCAGCGGCATAAGAACCGGGTGCACCTGAACATACGGCCGTACCAGTGCGACAAATGCGACAAGGGTTACCTCAGCCTGTGGTCGCTCAACGAACACAAGCGCTTCGTGCACGAGGGACAGAAGCGGCCGCTCAATTACCCCTGCCCCATGTGCGATAAGGTCTTCGACCGAAACACAACTATGAAGGCCCACGTCAGGACACACACAGGCGAGCGCCCGTACAAGTGTCCGCGGTGCCGCGCCGAGTTCAGCCAGGCGGGGATACTGGGCACGCACATCAAATTGGTGCACCTCAAGCTGACGAGGGATGGTAGACCGAAGAACTCCATTGCTGTTAAATAA
- Protein Sequence
- MNRMKTTVNKCCINCLLLDENIIQCYQIKNEMLKTIFQGDNLSLCYVCLKIISNAEAFIQNVQSNQIYLENYDHITESILETAKLQLQPITTLSNATLSIIEVNENEIKDDTFVVYYTGNARNESVKLEVKEEFMDYLDEDVHQNSEDDAHIKEDDYDVPLISLKESSTLEKTKLKQIKKVKVKKKHAKEKACDIVKGKSAICGFETIRLTKEQCMEERENMANNKKFISAFYKCTDCVKWFACKNGYEKHMEKHDKVSGEYRCDVCQQRRDSADKLMKHLRYHSLRYRCNVCGLTRISRLTMQDHYTAHHVEGPAGHFACSHCVKSFKRQVSLRKHIEYAHSKKTPAQCNICNKIYRSKETLKAHLFRKHLSEMSAGEVPHKSYECDQCGKAFRAPSQLRNHMSKHSAIRNYYCVECDKSFKSDMSLKQHLRIAAPHVNYMELPLGCDQCDKRFNTRRDLQRHKNRVHLNIRPYQCDKCDKGYLSLWSLNEHKRFVHEGQKRPLNYPCPMCDKVFDRNTTMKAHVRTHTGERPYKCPRCRAEFSQAGILGTHIKLVHLKLTRDGRPKNSIAVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -