Eata024768.1
Basic Information
- Insect
- Eumaeus atala
- Gene Symbol
- -
- Assembly
- GCA_017140195.1
- Location
- JAOYMN010031336.1:21359-25850[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.012 1 10.3 2.1 1 23 223 245 223 245 0.97 2 20 7.9 7e+02 1.4 0.7 6 23 257 274 257 274 0.91 3 20 7.2e-06 0.00063 20.4 1.2 2 23 325 346 325 346 0.97 4 20 2.2e-06 0.00019 22.0 2.0 1 23 352 375 352 375 0.97 5 20 0.027 2.3 9.2 0.2 3 23 383 403 381 403 0.94 6 20 5.1e-05 0.0045 17.7 1.8 1 23 409 431 409 431 0.97 7 20 3.6e-07 3.2e-05 24.5 4.7 1 23 437 459 437 459 0.98 8 20 4.5 4e+02 2.1 2.3 1 23 578 600 578 600 0.93 9 20 2.5e-05 0.0022 18.7 2.8 2 23 607 629 606 629 0.91 10 20 1e-05 0.0009 19.9 2.0 1 23 635 657 635 657 0.93 11 20 5.9e-07 5.2e-05 23.8 4.4 1 23 663 685 663 685 0.98 12 20 0.00022 0.02 15.7 1.9 1 23 691 713 691 713 0.97 13 20 1.4e-05 0.0013 19.5 5.1 1 23 719 741 719 741 0.97 14 20 0.074 6.5 7.8 5.7 1 23 747 770 747 770 0.89 15 20 1.1 95 4.1 1.7 3 23 821 840 819 840 0.95 16 20 9e-06 0.00079 20.1 0.6 1 23 846 869 846 869 0.95 17 20 2.4e-05 0.0021 18.8 6.9 1 23 875 897 875 897 0.97 18 20 0.00047 0.042 14.7 0.3 1 23 903 925 903 925 0.98 19 20 0.00095 0.084 13.7 0.5 1 23 931 953 931 953 0.96 20 20 0.0002 0.018 15.8 1.8 5 23 962 980 959 980 0.96
Sequence Information
- Coding Sequence
- ATGAACTGCTTAGAATATAATATATTCGGTATAGAAAATTTTTCAAATGTATGCAGAACTTGTGCTAATGTTACTGAATTTGTAATGCCCATATTTTTTGATGAAGGGTTACAAAATAAGTTAGCCGATAAAATTCATCAGCACCTTCCTATAAAGGTGTCTCAGGATGATGTTCTGCCCCATGTTGTGTGTTATCAATGTGTCAGCACAATTCTGGCATGGCATGACCTGGTGGAATGCTGTGTGCATGCTGATGCAAACCTGCAGCAGAGATTAGCTACACTTACGAAGGAATCAAATTCTAAAATAAATGAAAGCCAAAGTACAGAGCAATCTGAAGGAAGTGCTAATGCTAAGGTAAACAACACACAGTTTTTACCATTAGTAAATGAGATACTTTTAGAATATTTTCAAGCTATGGAAGTGGATGAATATAATTCGGATATAGAATATGTGTGTCAGGTTTGTGAAAGTAAACCAGCCGCTAAAACAATTGCGAATTTAACAGAACACCTTCAATTAGCTCATGGTGCAGAGCTTCACAACAATGAGTTACTGCAGACGTTTATAAAGAACAATATTACTCTTGAAGAAACGCTCAATGATGATCAATGTGACCTTGAAGATGAGCCTGAAGTAAACAATAAAGATATTGAACTACCAACTTATTTTTGTCCGTACTGTGACTGCGCGTTCTCTGCAACAACTAGACTTCTCTATCATATCAATAGACATGTAAATATTACAATTGAAGATGGACTTGAATGCTGCGGCGAAAACTTTGATAAGAAATCATTTGTCACTCATTTACAAGACTGCCATGTGACACGTGTACTCCACACTCCACATATATGTAGAAGCTGCGCTTATACCGCGATTGACGTACAAGATCTGCAAACACATATAGTCGACAATCATTTTAACGAGTCGCAAGATAAAGCCGAGGGCAGACGGCGGAAACACGTACCCGCTGAGTGTCCGAAATGTAACAAAACTTACTCGAACAAAAATAACATGCTTGTACACTTGAGATCACACACTCAGATTGAAATTTTTTCGTGCGACAAATGTAACAAACAATACAGAAGGCAGAGTAGTCTTAAAGTCCACCAGAAAATCATACACGAAGGGATCTTGAGGCATCTGTGCACAACATGTGGTGAAGCTTTTCCAACGAAAGTGGCGAGAGATGTGCACGCTCGAATACACACCGGTCTAAAACCGTTCACGTGTCCCCATTGCAATAAATCATACCGAGCCAAAAACACGTTAGATCGTCATATAGACATACATTTGGATGTTAGAAAATACTCCTGCCCCAAGTGCAATAAAAAGTTCAGGAAGAACTCTCATTTGAATCGACACTTAAACATACATGAAAAGAGAGAAACGAAATGTGATTTACTGTTGGACGATCCGATTGATGCTTATGTATCCGACGACGATAAACCTCTTTCGAACATGGCTGTGAGAAAGTCCGCTGATCTGTACCATAATTTTTATAGCGCTCTGGTAAATTTCCGAAATCATTTCGTAAACGAGCATAAGATTGAGAAAAGTTCCACAGATACAGACTCTAGCGACATCGATTTAGAAGACAACAACGAGAAAGAGATGGACATTCCTGAATACGATGACCTTACCAAATGTAACATGAGAAAAGATAAAATGAACCATGAAATCAGACAGGAACTGAGTCAAGTACAAACCAAAATCAATGGAAAAGTGTATTTTACTTGTATCGTCTGCGGCAAGAATCTTAGCTCCTCACATACATATGTATTCCACAAACGAATACACACCGGCGAGCGGCCATGTATATGCCATATCTGCGGAAAACAATTCCGCACGCCCAACGGCTTGCAACGACATTTGACGGAGACACACGAAAAGCAACGATTTTACATTTGTATTTTATGTCATAAAAGTTTTGCGAACTCTCAAAATCTTAAACAGCACATGCGTATCCACACTGGGGAGAGACCCTTTGTATGCACGCACTGTGGCAAACGATTTACTCAAAGTGGTTCACTACATGCTCATTTGAAAACCCATAGCGAACATTACCCCCACCAGTGCGCGGAATGTGGAGCGAAGTTTAAACTACGATCCGGTTTGACTAGGCACAAACTTAAACACACTGGAGAAAGGCCTCACGTTTGTGTTCATTGTGGAAAAGGGTTTCGACAGAAACACGAATTAAACAGTCACCTGCTGACACACACGGACGCCAAGCCTCACGCTTGTGGTAGTTGTGGCACGGCATTTAGACAACGTAAAGCGCTCAGACACCATTGTAAAAGGCTACATGAAGGCAACGCCGTGGAAACTCCTAGCCTCGTTGTACTACACCCTGGTGGTGACTACACAGATAATTTGAAGTTAGAAATAAGTCAATCGCAGAACGACGTGCTAGAGAAACCGATAAGATGTACGAGTAATGGAAAAAAATGTGTTGCGTGTTGTTTTTGCAACAAAAGCGTCCTGGCTACATCCTGGAAGCGTCACCTGAGGTCTCACGAGAACACCAAAAGATATAGTTGTCATGTATGCGGTCTCGGATTCAACGACAAGGGCAACCTCTCACGACACACGCAAGCTTTGCACAAAAAGCAAAGACCTCACGTATGTCACATTTGCAACAAAAACTTTTATAGAAAAAGTCACCTTCAAGATCATTTAGAATCGCACTCAATGAACAGAAACTACGTGTGCGATGCATGCGGAAAGGCCTCTAAGTCTAGTACTGCGTTGAGGATGCATAAAAAAATGCACGACGAGAGTTTTAAATTTAATTGTCTTTTTTGTGAGGCTCGATTTAAAAGAAAAAACCAACTTATAGCTCACGTGTCGGTGCATACAGGCGAAAAGGCTCACGTGTGTGAATGTGGCAAGGCATTTAGATTGAGGAGCCAACTCAACGTTCACACTCGTACACACATGGAAAGGAATAAAAGTGAATCATAA
- Protein Sequence
- MNCLEYNIFGIENFSNVCRTCANVTEFVMPIFFDEGLQNKLADKIHQHLPIKVSQDDVLPHVVCYQCVSTILAWHDLVECCVHADANLQQRLATLTKESNSKINESQSTEQSEGSANAKVNNTQFLPLVNEILLEYFQAMEVDEYNSDIEYVCQVCESKPAAKTIANLTEHLQLAHGAELHNNELLQTFIKNNITLEETLNDDQCDLEDEPEVNNKDIELPTYFCPYCDCAFSATTRLLYHINRHVNITIEDGLECCGENFDKKSFVTHLQDCHVTRVLHTPHICRSCAYTAIDVQDLQTHIVDNHFNESQDKAEGRRRKHVPAECPKCNKTYSNKNNMLVHLRSHTQIEIFSCDKCNKQYRRQSSLKVHQKIIHEGILRHLCTTCGEAFPTKVARDVHARIHTGLKPFTCPHCNKSYRAKNTLDRHIDIHLDVRKYSCPKCNKKFRKNSHLNRHLNIHEKRETKCDLLLDDPIDAYVSDDDKPLSNMAVRKSADLYHNFYSALVNFRNHFVNEHKIEKSSTDTDSSDIDLEDNNEKEMDIPEYDDLTKCNMRKDKMNHEIRQELSQVQTKINGKVYFTCIVCGKNLSSSHTYVFHKRIHTGERPCICHICGKQFRTPNGLQRHLTETHEKQRFYICILCHKSFANSQNLKQHMRIHTGERPFVCTHCGKRFTQSGSLHAHLKTHSEHYPHQCAECGAKFKLRSGLTRHKLKHTGERPHVCVHCGKGFRQKHELNSHLLTHTDAKPHACGSCGTAFRQRKALRHHCKRLHEGNAVETPSLVVLHPGGDYTDNLKLEISQSQNDVLEKPIRCTSNGKKCVACCFCNKSVLATSWKRHLRSHENTKRYSCHVCGLGFNDKGNLSRHTQALHKKQRPHVCHICNKNFYRKSHLQDHLESHSMNRNYVCDACGKASKSSTALRMHKKMHDESFKFNCLFCEARFKRKNQLIAHVSVHTGEKAHVCECGKAFRLRSQLNVHTRTHMERNKSES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -