Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.0046 7.6 6.7 0.0 2 16 2 16 1 22 0.90

2 4 0.0028 4.6 7.4 0.0 2 17 28 42 27 46 0.87

3 4 0.0053 8.7 6.5 0.0 2 15 54 67 53 72 0.92

4 4 7.5 1.2e+04 -3.6 0.0 2 9 80 87 80 87 0.89

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.0046	7.6	6.7	2	16	2	16	1	22	0.90
2	4	0.0028	4.6	7.4	2	17	28	42	27	46	0.87
3	4	0.0053	8.7	6.5	2	15	54	67	53	72	0.92
4	4	7.5	1.2e+04	-3.6	2	9	80	87	80	87	0.89

Coding Sequence: ATGCCAGACCAGTTGGTACGAGCCTTACAACATGTGTGCGAGGGGAGCCCCCAGTCGAGTCAGTCTAGTTCGGCTGTAATGCCAGACCAGTTGGTACGAGCCGTACAACATGTGTGCGAGGGGAGCTCCCAGTCGAGTCGGTCTAGTTCGGCTGTAATGCCAGACCAGTTGGTACGAGCCTTACAACACGTGTGCGAGGGGAGCCCCCAGTCGAGTCGGTCTAGTTCGGCTGTAATGCCAGACCAGTTGGTACGAGCCTTACTAAGTTCTGGTTATCATCTATTTACCTTTTTTGCGGGGAAATCCATTCACGCGCCTTCGCCGGCCCTGGGTGGGGTCCAGTGGTATGTGGGGCTCGCGGCATGTTATAGAGCCGAATACCCACAAAAACCACCGCGAGTGCCATCAGTGCCGCCTTTGGTGAGTTGCCCCGAAACAACGATCGTCAGGGCACCTCGACGGCTAGTCAATCCCCTAAGGGACCGTGGAGGAGGTCCTCCACAGCAGTTTTGCCCAGCACCACAGAACAACCCCACCAACTTTGGGACAGTGGATTGA
Protein Sequence: MPDQLVRALQHVCEGSPQSSQSSSAVMPDQLVRAVQHVCEGSSQSSRSSSAVMPDQLVRALQHVCEGSPQSSRSSSAVMPDQLVRALLSSGYHLFTFFAGKSIHAPSPALGGVQWYVGLAACYRAEYPQKPPRVPSVPPLVSCPETTIVRAPRRLVNPLRDRGGGPPQQFCPAPQNNPTNFGTVD

Sequence clustering based on sequence similarity using MMseqs2