Eame012081.1
Basic Information
- Insect
- Eumacrocentrus americanus
- Gene Symbol
- -
- Assembly
- GCA_018902335.1
- Location
- JABSMT010006420.1:1-7132[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00022 0.02 15.4 2.1 1 21 42 62 42 63 0.96 2 16 0.00053 0.049 14.2 4.7 1 23 71 94 71 94 0.98 3 16 0.034 3.1 8.5 0.7 1 21 131 151 131 152 0.94 4 16 0.06 5.5 7.7 2.3 1 23 160 183 160 183 0.96 5 16 4 3.7e+02 2.0 0.6 1 12 220 231 220 234 0.88 6 16 0.0032 0.29 11.7 4.7 1 21 262 282 262 283 0.96 7 16 3.4 3.2e+02 2.2 0.3 1 8 291 298 291 306 0.81 8 16 0.0025 0.23 12.1 1.2 1 21 434 454 434 455 0.95 9 16 0.12 11 6.7 0.5 1 17 463 479 463 480 0.89 10 16 0.32 30 5.4 5.7 1 21 509 529 509 530 0.95 11 16 0.00016 0.015 15.8 2.4 1 23 538 561 538 561 0.98 12 16 0.05 4.6 8.0 3.5 1 21 615 635 615 636 0.96 13 16 3.7 3.4e+02 2.1 5.2 1 23 644 667 644 667 0.96 14 16 0.012 1.1 9.9 2.0 1 21 741 761 741 762 0.95 15 16 0.00014 0.013 16.0 0.9 1 23 770 793 770 793 0.98 16 16 8.4 7.7e+02 1.0 0.3 1 10 1016 1025 1016 1035 0.83
Sequence Information
- Coding Sequence
- ATGTTTTTGTTGAAATCCCCTTTTTTTTATGTCAAGTCAAACATAGAACTCTGGAATCCAGCGGAGGCGAAGAAGATTTGGATCAAGCCAAAAGACGTGAGATTCAATCTCATGACTCGAAAATATCATTGTCCAACGTGTGACAAATCTTATACGAATCGTGGCAATACGCTTAGGCACTATCGTTACGAGTGCAATCAATCACCACGCTTCAAGTGCTCGTACTGTGGCATGCGTTGCTCGTACAAAAGCACTGTCCAGCTGCATATAAAACGAAGGCATCCTCGTCGACCCTGTGTCATGTCAAAAGTGGCAATCTGGTGGCCGGCGGACGCCCAAAAAATGTGGATGAAGCCAAGGGATATGGAGTGTAATCCCATCACTGGGAAATTTCACTGTCTCGCATGTGGCAGGCCCTATGCAAACAGTAAAAGTATGCTCAGGCATTATCGTTACGAGTGCATTGACTCGCGACGCTTCAAGTGTTATTACTGCGACAAGCTTTCAATGCAGAAAGGACATATGCTCGAGCACATAGCTCGAAAGCATCCCAATTGTCCTTATGACACGTCCAGCATAGTTCTCTGGAGTCCCCTGGAAGCTAAAAAGATGTGGTCGAACTCAGAAGACGATGATTTTGACTCGAAAACTGAACAATTTCATTGTCCCGCATGCAACAAAGCCTATTCCTACGAGCGCAAGATCTGGTCAACCAGGAGCATTCGTAGCTGGATGGAGAGACCTCAAGAGCTGGCGCGGAACATCAAATCCATCGGTGGGAGGTATCATTGTCCTACGTGCAACAAGGGCTACAGTCGAAAATGTGATATGATGAGACACTATCGTTTTGAGTGCAGTACACCTCGGTACTTCAAGTGTTCATATTGCTCGAAGCTTTCTATCAAAAAAGCTAATGTTCTAGATGGAGGGAATATAGTGGCCTGGAGTTTGGCGAACATTCAAACGAATCCATTGAGAATACATGACACAACAAAAAATCCCATCATCGAGAACTATCATTGTCCTACGTACAATAGGGCCTATGTGCTGAAAGGTGCTATGACCCAACACTATCGTTATCAGTGCAGCAATCCACGTTACTTCAAGTGTTGCTATTGCGGCATACTCAGCTTGCAAAGAGCCAGCATCCAACATCATATAAAACAAAATCATCCTAATCAGCCATTCAGCATGGACGTGATTCAACCAAATTATGAGCGAAATCTAATTTTCTGGAGGCAGGAGCAGGTTCAAGAGTGGTGGGTGAGCAACGACAGCATCAAGTTCTCGACCAAAAGGTTCCCCTGTCTCACGTGCAATAGAGCTTACACTCGCAAAGACCACATGCTCGAGCACTATCGTTACTCGTGCAAACAACCACGATACTTCAAGTGCTCTTACTGTGGCATTATCACCAAGCGAAAGAATAGGCTAAGGTCAAACGTAGTTCTCTGGAATCCGGGGAAGGCCCACAAGATTTGGCGGGGACTAACTGACGTGGGAATAAATCCTGCGACTGGAAAGTATCACTGTCCTACGTGCAACAGAGACTATTGCCACAAGGGCCCGATGATCAAGCACCATCGTTACGAGTGCCGTCAACGACGATACTTCAAGTGCCATTATTGTGGCAAGCTCACCATGCAAAAGGGCAACGTCCAAGATCACATAAGACGAATGCATCCTCATCAACCATACAAATGGGAGATATATCAAGGAGAATTTATTAATTTTTATGTTGCAGGATCCAAGTCACATGTAAGGCTGATTTCGAGACCTCAAGACACGACGATGAGCGCCGAGGGGATAAAAAACGTGACAATGAATCCACTCACTGGGAAATATCATTGTCCAACATGCGAGAGAGATTATTGTCGAAAGCCTGACATGTTGAAGCACTATCGTTTCCAGTGCACTCAACCGCGATACTTTAAATGTTTCTATTGTAGCAAATTGAGCTTGCAAAAAGTTCATATTCAGACTCACATGAAACGAAGACATCCTAATAAACCATGCATCAAAAATAGTTCTCTGGAGTCCTGTGAGAGCCCAAGACGCTTGGCGTGGACTAGCAAACACAAACGTGAATCCAAACACTGGCAAGTATCACTGTCCAAGACCCTTTTAAGTATCAGGCCAAATGCAGCAGTTCAGAGACCAGAGAAAGCTGTAAATGAATGGCAAACACTAAACTGTGAACTTGATGCTACTACAGGCAAATATCATTGTCCTACGTGCAATCGAGGCTATTCTAGAAAGCCCAAGATGTTTGAGCACTATCGTTACGAGTGCACTCGACTACGATTGTTCAAGTGCTCTTATTGTGGCAAGCTCATTGTAAAAAAGGGCAATTTACTGGCACACACACGAAGAAGACATCCTGGACAGCCTTTGAAATTCGAGATAAATCAGCAATTTATGACGAGCCAGAGCCAGCTAATTCAGATCCACTGGATGTGGAAAGTTGGTGGAATTCTTCCAGTAGAAAATATCATTGTCCCACATGCAAGCGATCATACGCTGATATTAATAATATGCGTACTCATTGTCGTTACGAATGCAGTCATCCGCGAGAGTTTAAGTGTTCTTATTGTGGCCAAGTGTACAGAAGGAAAATATTTGTCAGATTCCATAGATGTGGAGGATGTGAAACTCGAGGAGTCGTCGGAGGATCAATCAAACAGCTCAATTTCAGATACTTCGTCAGATTCCATAAACGTGAAGGATGTGGAACTCGAGGAGCAGTGGGAGGGTCAATCGAGAATCCCCATGAATCCCACAACTAAAAAGTACCACTGTCCTACATGTAACAACTCTTATTTATGTGAAATCGATGCACGCCATCATCATTGGTATGATTGTCTCTTTCCATCGCAAGAAGTGCATGAATGTCGTCGCTGTCATTTGGGATTGAATTCTTGGGCCAATTGTAACTTGATTTTGATTTCAGAATATTCGACAGTTTTCGTAGACGTGGAGGATTTGAGACTCGAGGAGCAGTGGGTGGGTCAATTGAGAATCTTCATGAATCCCGCAACTAAAAAGTACTACTGTCCTACATGTAACAACTCTTATTTACGTGAAAAAGATGCTCTCGATCATCATTGGTATGATTGTCTCTATCCATCGCAAGAAGTGCATGGATGTGGTTACTGTCCTTTG
- Protein Sequence
- MFLLKSPFFYVKSNIELWNPAEAKKIWIKPKDVRFNLMTRKYHCPTCDKSYTNRGNTLRHYRYECNQSPRFKCSYCGMRCSYKSTVQLHIKRRHPRRPCVMSKVAIWWPADAQKMWMKPRDMECNPITGKFHCLACGRPYANSKSMLRHYRYECIDSRRFKCYYCDKLSMQKGHMLEHIARKHPNCPYDTSSIVLWSPLEAKKMWSNSEDDDFDSKTEQFHCPACNKAYSYERKIWSTRSIRSWMERPQELARNIKSIGGRYHCPTCNKGYSRKCDMMRHYRFECSTPRYFKCSYCSKLSIKKANVLDGGNIVAWSLANIQTNPLRIHDTTKNPIIENYHCPTYNRAYVLKGAMTQHYRYQCSNPRYFKCCYCGILSLQRASIQHHIKQNHPNQPFSMDVIQPNYERNLIFWRQEQVQEWWVSNDSIKFSTKRFPCLTCNRAYTRKDHMLEHYRYSCKQPRYFKCSYCGIITKRKNRLRSNVVLWNPGKAHKIWRGLTDVGINPATGKYHCPTCNRDYCHKGPMIKHHRYECRQRRYFKCHYCGKLTMQKGNVQDHIRRMHPHQPYKWEIYQGEFINFYVAGSKSHVRLISRPQDTTMSAEGIKNVTMNPLTGKYHCPTCERDYCRKPDMLKHYRFQCTQPRYFKCFYCSKLSLQKVHIQTHMKRRHPNKPCIKNSSLESCESPRRLAWTSKHKRESKHWQVSLSKTLLSIRPNAAVQRPEKAVNEWQTLNCELDATTGKYHCPTCNRGYSRKPKMFEHYRYECTRLRLFKCSYCGKLIVKKGNLLAHTRRRHPGQPLKFEINQQFMTSQSQLIQIHWMWKVGGILPVENIIVPHASDHTLILIICVLIVVTNAVIRESLSVLIVAKCTEGKYLSDSIDVEDVKLEESSEDQSNSSISDTSSDSINVKDVELEEQWEGQSRIPMNPTTKKYHCPTCNNSYLCEIDARHHHWYDCLFPSQEVHECRRCHLGLNSWANCNLILISEYSTVFVDVEDLRLEEQWVGQLRIFMNPATKKYYCPTCNNSYLREKDALDHHWYDCLYPSQEVHGCGYCPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -