Eame018053.1
Basic Information
- Insect
- Eumacrocentrus americanus
- Gene Symbol
- RREB1
- Assembly
- GCA_018902335.1
- Location
- JABSMT010016609.1:1516-7290[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0033 0.3 11.7 0.1 1 23 67 89 67 89 0.97 2 13 5 4.6e+02 1.7 0.0 3 23 253 275 251 275 0.86 3 13 1.9 1.8e+02 3.0 0.9 1 10 358 367 358 377 0.90 4 13 0.015 1.4 9.6 0.7 1 23 487 509 487 509 0.97 5 13 9.9e-05 0.0091 16.5 0.2 1 23 518 540 518 540 0.98 6 13 0.00029 0.027 15.0 2.5 1 23 546 569 546 569 0.97 7 13 6e-05 0.0055 17.2 1.3 1 23 943 966 943 966 0.97 8 13 6.4e-05 0.0059 17.1 0.2 2 23 1239 1260 1238 1260 0.97 9 13 0.16 15 6.4 4.2 1 23 1266 1289 1266 1289 0.96 10 13 0.026 2.4 8.9 1.6 1 23 1323 1347 1323 1347 0.93 11 13 7 6.5e+02 1.2 5.0 1 23 1436 1459 1436 1459 0.87 12 13 0.0094 0.86 10.2 0.4 2 23 1507 1528 1506 1528 0.94 13 13 0.0022 0.2 12.2 5.3 1 23 1534 1556 1534 1556 0.98
Sequence Information
- Coding Sequence
- ATGTTGGTTCTCATGACAACAGTCAAGACATCAATAAGAAACATTTATTGCTTCTCATACAAGCCATCATTGCTTCCTGAGATAACGACTGTGAGGCGAAGACCTCGCGTGATCATCGTAAACAGGCCGGACGAACGACATCATAACGAGACGCAAACCGATGCAGCATTGTCGTCATCGGTCGAGCATTTAGATGGATTTCCCTGTCCAGCTTGTCCCTCAGTGCTGACAACATCTCACGAGCTGACAAATCACATCCTGAGTCACAATTCATCACCCAGCAGTGATTGCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAACATGAATAGACATCTGCGAACAGCCCACCGTGAGGTTTGCCAATCGCCAATCAGCTGTACAGATTCTGAGAGTAGCAATGACTCAAATAGACCAGCGAGTAGACGTCAAGTCGACGAGTACAATAACAATGAAATTGCCAAGAGTAGTTCACCTGAAATCGTTGATCAACGACGTGCTTCACCAACATTGAAAACCACCAAGAGAAAGAGGGCATCGGACGTTGAAGATGATCCAAATGTTATCAAGAAGAACAAGATCTTCCTGAATAATCCCAGATTTGAGGCAAAGAGTGTAGGATTAAAGAAGTATAATAGTCTTGCTTGTCCTGTTTGTGAAAACCTTGTCTTTGCCACTGATGAGCTGCTGGAAAATCATATAGGCGAAAAGCATCCAAACCACAAACCTATATGTGAGCCATGCAACAGAATCTTCAAAACTCATCGTATCCTCAGCCTCCACCAGTTCATGGACCATTTTGGAGAGAAACCTTCTGCACCTCCCCAGAATCGACAAGACTCAGTGGAAGGCTTCACCGATTTGACTTTCGTAGATTTCTCGTCAGACAAGTTCCCAACCATTGCACGCGCCATGTGCGAGCAATCTGTACACAGACCAGCCTCTGGCGAAGTTGCAACATTTCAATGTACAAAATGCTCACGAGCATTCCCCTGCAAACAAGCCGTGGATGCCCACGAAATGGACTGTGGCAATGCTCACCAGCAGGCAACTAATCTCGATGACGACCACTCAAAAAGAAATGACTTTTTTGCTGGACTGAATCTCCAAAATCGAACAGCAGCCACTGAGGCCAGAGAAGGCAAGGATCTCGCTGACATTCAGAGTATTATCTCCGTGACATCGGGCCCAATTTTCCCTCGCTCAGATGCCAGCACACCTGACCATCACATCAAGTTGAACCCTAATATTGGCTCGTCAGGTTCGTCTGGAGCAGCTTCAGAGTATCAGGAAGAGACTCAAGATGCCTTTGCCGTAGAATTCAGAAAGATGAAATTGAAGGGCGAGTTTCCATGCAGACTGTGTGGCATGAAATTCCAAAATTTACGAGCTTTGAAAGGCCACAATAGACAACACATGAATGTTGCTCCTGGAATGCCATATCCCTGCACTATGTGTCCCTACACGTCCACAGACAAGGCGACCCTGGTAAGACACCTTCGAGATCACAATGGCGATCGTCCTTACGAGTGTTCTATCTGTAACTATGCCTTCACTACCAAAGCCAACTGCGAGAGACACGTAAGAAATCGTCATGGGAAACAGACGAGGGAAGAAATAAAGAGTGTGCTGATTTATCATCCAAATGAGGACTCGACGAATGAGGGCATCGACAGAGGCTCACCGAGAGTGTCAAGAGACGAAGCTCGTAGATCTCTAGTTTACCCTGACGATCTTCATCATCACCACCAGCAGCAGCAGCAGCAGCTCCAATTCCCTATGGAGAGCCTGTCCAGCGACTTGGCAATCTCCGAAGAGGCTATTAGACTTCGACACATGAGTTTGCCTACTATGGTAAACCCTCCAATCAGTCATTACAACCAATCTGGTCTCTTCTCGCGACCTCCGGTCGTCCACCCCCTCGAGCTGACCAACAGGATCTGCGAAGAATCTGGCAACATGAGAATGAACGAAGAGGACTCGAGATCATCTGATGACAGTGTGTCTCCAGTCAGTGAACGCCAATCTGATGGACACCAAAGACTTCAGGACAGTCCTGTAGCGGGCAGCAGTAACGATGCACCTCTAGATCTCTCGATGGATGTGCTGGACCTCAGCAAGAAGTCAGCAAAAGACACTGAGTTAAATCCAGCGACTAAGAATAACAACACCAACACGGACTCCAATCCATCAACGGAGAATAACAACACGAATGCAGAAGTGATTGAGGCAGCTCAGCGTCTTTTTCTGGCTCGAGCATTGCTAGCTGAAAATTCACCGAGTACCCTCGGAGCTATCTACAACAATACTCCACTTCTCTACGGGAATTTAGGGACATATCCAACAGGAGCAGGATCTATACCATCTTATCTCTTCAATCATCCTCTATTCGGTCAAAACTTGACCAGCAGAGAACAACTACGAAGGGAAATGGTTCGTCTGCAGTTGACGAGTGGAGGAACATTGGTCGAGCCATCAATGGGCAATGCAAGCTTCTCTGCTGCTTATCCACAGGGACAACAGATGCCTTCAGGATCGCGGAACGAGCAGACTGATTTTCCGATTGCAATGACCTCCTCCAACAGGTCCACGAGTTCTCGAGACAGAAACAACAGGACGCAACAGAACTCGGCCAATTCTTCAGTGAAGATGGTTATTAAGAACGGAGTATTGATGCCTAAGCAGAAGCAGAGAAGATATAGAACTGAAAAGCCATATGTTTGTGAAATTTGCGATGCAAAATTCACCCTGAGAAGTAACATGGAGAGACACATCAAGCATCAACATCCTAAACGTTGGAGCCAGAGGCCACGGGGAGGTCATTCGACCAGAGGACGGCCACCAACTAATCCCCCAACATTGCTTCAGAGTCTCAATAGTTCCTCGAGTCTCCAGCAGTCCAATAACATGGCATTTCCCAAGCCTGAGCAGTTCGGTGCGTCTGAGAATGACAAACATGTGATTTCCACTGAAGTGAAGAATGCAATTCTTGCACAACAGTTGAAGGGCAACAAGCAGGACGACAATGACTCTGAAGAAGAAGAGCTGATAATCGACGAGGCCGCTGGTGAAAAAGATTCGGAGCATCAAGACAACCATGACCACCCTACTAGCCTGCTACGAGGCAAATTGGAGGAACATATAAATAATAAGGACAATAGCAACAAGAATTATGAGAATGTCCCTGAAGATTTTTCCAAGTCTGACGACACTTCCAATCAGAGTGAGCACCAGGTCCGAGTGAAAACTGAGCCAGAGGCAAGCGAAGAAGAAGAAAAATCTGAAGATGATAAAGAAAAAAACATGTCAGCCACTATGAAAACAGAGGACAACAATGTGGACCTTGCTAGTGTCTCTGAGCTGCTGGACAATGCTTCCCAACAGTATCAGCAGTTTCGTCCTCAGTATATAAGTGATGAAGAGGGTTTAGTAGCTTCAACCAGTGACTGCAACAACTCTGGAAGTGACGAAAAATCAGACTCAATGAATTTCGCCAATTCTGGTGACTCGAATTTCTCCTCCAAATGGATGAAAAAGAAGAAGAAAATGATGAAAAAAAAGAAGAAAAAAATGTCTGCATATTCAATGGCGCCCAATAAAGTCCCATGTACATACTGCGAGAGGACATTTCCCTGGCAATCATCTCTGAGGAGGCATATTCTCACTCACACCGGTCAAAAGCCCTTTCAGTGTGCCTACTGTTCCCTGCTCTTCACAACCAAGTCCAACTGCGACCGTCATTTGCTCAGAAAACATAGGGCCAGTCTGAATAGATATCGTATGAGACACTGTCCCTCACCGGAGCATCACCCCAACAACAATAGATTCGCTATGCGAAATGTACCAGAAAGACCATACAAATGCAATCGATGCCCAAGCTCGACATTCTCCACCCTTGGAAACCTGAAGAAGCACAGATCTGCCAAGCACTCGGATAATGGAAAGTCCTCGAGGCCTGAGAGTCCAATGAGTGAGACAAATTCAGAGCAGCAGCATAGCCCGATGCCAATCATAAAACAGAATGACAACAGCGACTACGAGAGTCAATCCTCAAGTATCTCGGAGGGTACCGAGAACCCTCTAGCCATCACTGACCTCACCAAGTCTAATGTCAACACATCATCCTCTGCAAATGATACACAGAGATCACGTAGACCTTCCCCAAGGTCATCACCAGGGCCTGCAGATGGTCCATTCAAATGTCATCTTTGTGACTGTGGTTTTGCTGAAAGACAAGATTGTCTTGATCATATCAAAGACAGCCACGTGAAGGCTTACGAATTACTAATGATCAAAGGAGCACTGGATATGGATACTGAGAACATGGATGAGCATCCAGCAACTCAGCAGTTGAGTGATCCTGAGGAGAAACGAGGCAAATTCCCAGACTATAGCAACAGAAAGGTTGTATGTGCCTTCTGCATGCGTCGTTTCTGGTCTGCAGAAGACCTGCGACGTCATATGAGGACCCACACAGGTGAACGACCATACTCCTGTGATATTTGTTCCAGGAGATTTACTTTGAAACATAGCATGCTTCGTCATCGCAAGAAGCACGAGTCTGTGGACTCGACGATGTATGTGGGCACGAGTGGAGACGAGGAGAACACTCCAACTCAGCCACCAACGATAACTCCACGCAGTCAGCAGCAAGCAGTGTTCAATTCTACCACGACTGGCGACTCCAGAGTCCAGGAAAGAATGTCTCTGCCCACTGTGGCAACAGTGGCAACTGGAGACGCGGCACCCAACGGACTCATGAGATTTAATCCCTACGAGAACCTCACCACCTTCACTGGTAGGTTGACAAATACCCAGCATAATTACACCAACACCGAGTTGACGCCTGATGGCAATGACAATGACTTGATCTCGAATTTGCTGGGTATCCGGGACCGAAATATTATTGAACAGGTTCTTCAAGCCTCTGCTGACGACGCAGCAAAATTACTTGGCGTCAATAGAAGCCACGATTGA
- Protein Sequence
- MLVLMTTVKTSIRNIYCFSYKPSLLPEITTVRRRPRVIIVNRPDERHHNETQTDAALSSSVEHLDGFPCPACPSVLTTSHELTNHILSHNSSPSSDCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMNRHLRTAHREVCQSPISCTDSESSNDSNRPASRRQVDEYNNNEIAKSSSPEIVDQRRASPTLKTTKRKRASDVEDDPNVIKKNKIFLNNPRFEAKSVGLKKYNSLACPVCENLVFATDELLENHIGEKHPNHKPICEPCNRIFKTHRILSLHQFMDHFGEKPSAPPQNRQDSVEGFTDLTFVDFSSDKFPTIARAMCEQSVHRPASGEVATFQCTKCSRAFPCKQAVDAHEMDCGNAHQQATNLDDDHSKRNDFFAGLNLQNRTAATEAREGKDLADIQSIISVTSGPIFPRSDASTPDHHIKLNPNIGSSGSSGAASEYQEETQDAFAVEFRKMKLKGEFPCRLCGMKFQNLRALKGHNRQHMNVAPGMPYPCTMCPYTSTDKATLVRHLRDHNGDRPYECSICNYAFTTKANCERHVRNRHGKQTREEIKSVLIYHPNEDSTNEGIDRGSPRVSRDEARRSLVYPDDLHHHHQQQQQQLQFPMESLSSDLAISEEAIRLRHMSLPTMVNPPISHYNQSGLFSRPPVVHPLELTNRICEESGNMRMNEEDSRSSDDSVSPVSERQSDGHQRLQDSPVAGSSNDAPLDLSMDVLDLSKKSAKDTELNPATKNNNTNTDSNPSTENNNTNAEVIEAAQRLFLARALLAENSPSTLGAIYNNTPLLYGNLGTYPTGAGSIPSYLFNHPLFGQNLTSREQLRREMVRLQLTSGGTLVEPSMGNASFSAAYPQGQQMPSGSRNEQTDFPIAMTSSNRSTSSRDRNNRTQQNSANSSVKMVIKNGVLMPKQKQRRYRTEKPYVCEICDAKFTLRSNMERHIKHQHPKRWSQRPRGGHSTRGRPPTNPPTLLQSLNSSSSLQQSNNMAFPKPEQFGASENDKHVISTEVKNAILAQQLKGNKQDDNDSEEEELIIDEAAGEKDSEHQDNHDHPTSLLRGKLEEHINNKDNSNKNYENVPEDFSKSDDTSNQSEHQVRVKTEPEASEEEEKSEDDKEKNMSATMKTEDNNVDLASVSELLDNASQQYQQFRPQYISDEEGLVASTSDCNNSGSDEKSDSMNFANSGDSNFSSKWMKKKKKMMKKKKKKMSAYSMAPNKVPCTYCERTFPWQSSLRRHILTHTGQKPFQCAYCSLLFTTKSNCDRHLLRKHRASLNRYRMRHCPSPEHHPNNNRFAMRNVPERPYKCNRCPSSTFSTLGNLKKHRSAKHSDNGKSSRPESPMSETNSEQQHSPMPIIKQNDNSDYESQSSSISEGTENPLAITDLTKSNVNTSSSANDTQRSRRPSPRSSPGPADGPFKCHLCDCGFAERQDCLDHIKDSHVKAYELLMIKGALDMDTENMDEHPATQQLSDPEEKRGKFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPYSCDICSRRFTLKHSMLRHRKKHESVDSTMYVGTSGDEENTPTQPPTITPRSQQQAVFNSTTTGDSRVQERMSLPTVATVATGDAAPNGLMRFNPYENLTTFTGRLTNTQHNYTNTELTPDGNDNDLISNLLGIRDRNIIEQVLQASADDAAKLLGVNRSHD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -