Eame003697.1
Basic Information
- Insect
- Eumacrocentrus americanus
- Gene Symbol
- L
- Assembly
- GCA_018902335.1
- Location
- JABSMT010009620.1:3030-7517[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 6.3e-06 0.00058 20.2 1.3 1 23 121 143 121 143 0.98 2 19 0.38 35 5.2 3.9 1 23 149 171 149 171 0.97 3 19 4.5e-07 4.2e-05 23.8 2.2 1 23 177 199 177 199 0.99 4 19 5.8e-05 0.0053 17.2 0.9 1 23 205 227 205 227 0.98 5 19 4.9 4.5e+02 1.7 1.2 3 23 297 319 295 319 0.80 6 19 0.71 66 4.3 0.2 5 23 353 372 352 372 0.90 7 19 0.013 1.2 9.8 0.1 2 23 382 404 381 404 0.89 8 19 0.29 26 5.6 0.1 3 23 461 481 460 481 0.97 9 19 0.037 3.4 8.4 0.2 2 23 494 515 493 515 0.96 10 19 1.4e-05 0.0013 19.1 0.8 1 23 524 547 524 547 0.96 11 19 3.3 3e+02 2.2 0.3 1 23 552 575 552 575 0.91 12 19 1.2 1.1e+02 3.6 0.0 5 23 602 621 601 621 0.90 13 19 1.8 1.7e+02 3.0 4.7 1 23 647 669 647 669 0.97 14 19 0.0028 0.26 11.9 0.4 1 23 674 697 674 697 0.94 15 19 1.4 1.3e+02 3.4 0.3 2 23 757 780 756 780 0.84 16 19 7.7e-05 0.0071 16.8 0.6 2 23 795 816 794 817 0.94 17 19 0.011 1 10.0 0.1 1 19 826 844 826 849 0.76 18 19 0.47 43 4.9 0.1 4 23 859 878 856 878 0.91 19 19 0.0009 0.083 13.5 1.5 1 23 1057 1079 1057 1079 0.97
Sequence Information
- Coding Sequence
- ATGACCTGCATTGCTCTGGAAATAGTTGGTCGATTGAAATATTCCTCGAGTCCTCCTGGTCGTCTCCCTTCGAGATTACACGGAGACTCGGTGACTCATTGCTCCCAAACGTCTCCTATGTGTCTCCCACTGGGAAACGGGACGCTCGAGTCCCCCGTCAGACTCCCAAGGGAGATTACGGAAGGATTACTGGCAAACGGAAGTTTCTCCTGGCGCAGTGAAGATGACAGTATTATTTGCCAAAGAGGAGGTGGTACTCCATCCTCTTGTACAACGTCCACATCGATGAGTTTTGCATCTGAACCAGAAGCTGATGTTGACTTGAGAATGGGTGTTGATACGAGCAATCCATCAGGTCCATATCCTTGTCAGTTCTGTGAAAAATCGTTTCCAAGTTTGAGTTATCTGAAGAAACACGAGCAGACTCATGGTGATCAAATGCCCTACCGATGCAGCTGGTGTGCACGATTGTTCAAACACAAACGCAGCAGAGACCGCCACGTGAAGCTGCACACTGGAGATAGGAGATATCGTTGCAACCAGTGTGAGGCAGCCTTTTCACGCAGTGATCATCTAAAGATCCACATGAAGACGCACGACAATCAGAAGCCCTATCACTGCACAGAGTGCTCTCGAGGATACAATACAGCAGCTGCCTTGACGTCTCACATGCAGTCTCACAAAAGACCTCAGTCCTCGAATCAATACTCCAGAACAATCACTGACGATCGTCGAAGTTCATCCTGGCACAGTTTGGCATCATCACCAACTGTGAATTCTCCTCTGCCAATCATGACTACGTCTCTGTCTCAGAAAATTCAGCCAAGCTACTCTCCAGATCCTGATCCATCTAGTGCATCGTTCTTGAGGTCATCGTTGACCCTGGCGTGCATGTACTGCACGAGGGACACATTCACCAGCATGGAGCAGCTCCAGCTTCACGTGCACACGATGCACGAGACTATTTTGAGTGGAGAAAGTCCATCTACGTCGCCTCTGGACGTTTCTTCTCGTGTGTCTCGACGGCGAAGAAAACGAGAGGAACTTGATCGCAAGCAATGCAGCACGAAATTTTCCAAAGTGACTTCCCTCAGAGATCACTTGATTGCAGATCATCGTAGTGATGATTCTATGTCAACTCTAACGTGTCCACTCTGTGGCATTCCTTGCTCTTCAGCAGCTAATTATGCAGAGCATTATGTGCTTGAGCATTGTGAGAATCGATCGATCATCATGGGCCAGAAAAACCAACGGTCGGATGATGCAACGAGTTCCATAGAAATCGAGGAAACCATTAGACAAAGTCTTTCTGAAGTTAAAAATTATGTTAATGAAGCTTCCTCTAGAGCACCGGACAATTATTCTTCCAGTACTCTGCTCTGTGGACAATGCGGAGCTGCTCTAAAAGACTTTGAATCATTCAGAATCCACGTGGCAAGACACCTACAAGCCAGTCACCAACAAAAGTTCACGAGTATTCGTTGTCCCAAGTGTGAATTGACTTTTCAAGCTCGTGAGGACATGTTGAGTCATCTAATCAAGCATTTCCTGGGTCAAACAATGAAGCAGTATACATGCGAGACATGTAACAAATATTTTCCTGATTCTGAAACCCTCCAGAAGCATTTAATGGAGTCACATGCTCATCACCTGTACAGATGTGCTCTCTGCCGAGACACATTCGACTCTCGAGTCGCTATTCAAGTGCATTTCACCGTGAAGCACACGCGAGAAACGAGTGTATACCACTGCAGTGGCTGTACAAATTCAAAGAGTGAAGAGTCTCATGAGAAGACACTAGATGACTGTGGAAATGTCTTTAAAAACATGACAGAGATGATGGAGCACGTGGCGAATGTTCACGCACCTCAGTCTAGTCCTGTTGAGCTTTCTTCTCCAGGAAATGCTGTCTCTACGCCAGGAGTCATTGGAGAATTATTTAGATGCTGCTTCTGTGGTATTTATTGCGCTTCAGACTTGGATCTGCAGCATCATCTGGCGAGCCATTCGACGTGCCTTTATCGGTGTCCCATTTGTCGTGAGGGATTCACCGTTGAGTTCTTGTTGGACAAACACATTGCTCATAGCCACAGCGTCGTTGAAAACGATCCGATAGAGAATCAAAAGCTCTATTGTCGTTCAAGATCACAAGAAGAATTGGTCAGAAATAAAAGGCGACGTTCTCCAGACACCAATAGCAATCTGCATCAACCTGACAATACAAAACGCTCGATTTGCCGTCCTATTAGCAGTCTCACGAGTCCCCAACGCTGTGAATTCTGCGAGAGATCAGATTTCTCAAGTGAAGCTGAACTACGTGCCCACAAGAAGCTTGCCCACAAGTCTCCAAGCAAGCTACAGACTAAACCTCTGTCTCTGCAGGTCTGTAATTACTGCGGGGAGACACTGAGGTCCAGAGTAGAACTGGAAGCTCACACCAGGCTTCATCATGCTCTAAACGACCCTGGAAAACGCTACAAGTGCAATATATGTGATGAAGTATTTTCTTCTGGTGGTATTCTAGCAGAGCACAAGCTTCAGCAGCACTGTAAGATCCAATTGAGCGACGTGTGCATCGTCTGTCGAGAGTCATTGACCAGTGAGTCTGATTTTATGGAGCACGTCCAGAAGCACAGTCTAGAAGGCATTGATCCTCACCAGAGACTCGACAATCTCCTGCCTCACATTCCAGCACATTGTGTAGTCTGCAGACAGACACTTATCAGCGAATTAGAGTGTCAACTTCATGCCAAATACCATTTGCGATCCTCTGTGGATGCTCAAGGCTCCAGTCAAAAGATCCAGAGCTGTTGTATATGTCTCAGAGAATTCGATGACGACGATGATGCAGTTAGCTTACCATCCAAGTGTGTCACGATGACTGATCAGCAGCTGAAGGTCTGCAAGCGTTGTTATATCAGGCATTCGCAGGGTTTACCCATCTTGGGATCACTCTACGACAATTTGGAGAATAAGTGGGAGGAAAAGGTTTCCACGAGTGAAGACCAGGAAAAGAGTAATGTCTCTGGGGAGAGTAATGAGTACAAGACGATGAAGACCATCAAGTTTGAAGGAACTGAAGATGCACACGTGACTGTGGAGCATGAAAAAATGCCTGGGACTTTTGAAAATCATGCACTAGAACAAAATCTTGCTGGCGCCCGTCCATATCACTGTCCCCATTGCGCTCTAAAATTCTCCTTTACAGCTGAACTGGAGCGTCACCTTGCTATTCACAGGGACAAGAAAGCCACCTCCTCGCCAGTGAATGTTCAACAAGAGACAGAGTTGGTAGGGCTTTCGCGACGTCTCGAGGACAATCAGTCTTTAGACAATGTCATTGTCAAGGAAGAGATTATTGTCAATCCAGAAGAAGAGTTGAGCAATGGAAATACGGATCAACTTGATCTCGAAGAATCCGAGCATGAATATCAAAATGAGGACTCGGTTTTCATAACTGAGAGTAATAATGTTGATTAA
- Protein Sequence
- MTCIALEIVGRLKYSSSPPGRLPSRLHGDSVTHCSQTSPMCLPLGNGTLESPVRLPREITEGLLANGSFSWRSEDDSIICQRGGGTPSSCTTSTSMSFASEPEADVDLRMGVDTSNPSGPYPCQFCEKSFPSLSYLKKHEQTHGDQMPYRCSWCARLFKHKRSRDRHVKLHTGDRRYRCNQCEAAFSRSDHLKIHMKTHDNQKPYHCTECSRGYNTAAALTSHMQSHKRPQSSNQYSRTITDDRRSSSWHSLASSPTVNSPLPIMTTSLSQKIQPSYSPDPDPSSASFLRSSLTLACMYCTRDTFTSMEQLQLHVHTMHETILSGESPSTSPLDVSSRVSRRRRKREELDRKQCSTKFSKVTSLRDHLIADHRSDDSMSTLTCPLCGIPCSSAANYAEHYVLEHCENRSIIMGQKNQRSDDATSSIEIEETIRQSLSEVKNYVNEASSRAPDNYSSSTLLCGQCGAALKDFESFRIHVARHLQASHQQKFTSIRCPKCELTFQAREDMLSHLIKHFLGQTMKQYTCETCNKYFPDSETLQKHLMESHAHHLYRCALCRDTFDSRVAIQVHFTVKHTRETSVYHCSGCTNSKSEESHEKTLDDCGNVFKNMTEMMEHVANVHAPQSSPVELSSPGNAVSTPGVIGELFRCCFCGIYCASDLDLQHHLASHSTCLYRCPICREGFTVEFLLDKHIAHSHSVVENDPIENQKLYCRSRSQEELVRNKRRRSPDTNSNLHQPDNTKRSICRPISSLTSPQRCEFCERSDFSSEAELRAHKKLAHKSPSKLQTKPLSLQVCNYCGETLRSRVELEAHTRLHHALNDPGKRYKCNICDEVFSSGGILAEHKLQQHCKIQLSDVCIVCRESLTSESDFMEHVQKHSLEGIDPHQRLDNLLPHIPAHCVVCRQTLISELECQLHAKYHLRSSVDAQGSSQKIQSCCICLREFDDDDDAVSLPSKCVTMTDQQLKVCKRCYIRHSQGLPILGSLYDNLENKWEEKVSTSEDQEKSNVSGESNEYKTMKTIKFEGTEDAHVTVEHEKMPGTFENHALEQNLAGARPYHCPHCALKFSFTAELERHLAIHRDKKATSSPVNVQQETELVGLSRRLEDNQSLDNVIVKEEIIVNPEEELSNGNTDQLDLEESEHEYQNEDSVFITESNNVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -