Eame009781.1
Basic Information
- Insect
- Eumacrocentrus americanus
- Gene Symbol
- -
- Assembly
- GCA_018902335.1
- Location
- JABSMT010028031.1:1897-5336[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.3e-05 0.0021 18.5 0.7 1 23 151 173 151 173 0.95 2 13 0.00083 0.077 13.6 1.1 3 23 181 201 180 201 0.99 3 13 0.0028 0.26 11.9 0.1 1 23 327 349 327 349 0.98 4 13 0.026 2.4 8.8 0.0 1 23 355 378 355 378 0.96 5 13 0.00013 0.012 16.1 0.5 1 23 404 426 404 426 0.98 6 13 1.5 1.4e+02 3.3 0.0 1 23 442 464 442 464 0.86 7 13 1.1 1e+02 3.8 0.3 2 23 471 493 471 493 0.94 8 13 0.001 0.095 13.3 4.0 2 23 501 522 501 522 0.95 9 13 0.0045 0.41 11.2 5.0 3 23 530 550 528 550 0.98 10 13 0.012 1.1 9.9 0.1 3 23 557 577 556 577 0.97 11 13 0.031 2.8 8.6 0.6 1 15 586 600 586 602 0.89 12 13 0.028 2.6 8.7 0.0 1 23 679 701 679 701 0.92 13 13 0.0073 0.67 10.6 0.0 1 20 1091 1110 1091 1113 0.94
Sequence Information
- Coding Sequence
- ATGGATGTCTCAGGTGACTTGACTCTCCAGTGGGTGGAGGAGGTGGGCAATGTCATCCACGAGGAGGTTATTTGTGGTCTGGGAGATGACCTTGCTGTTCAGGATGGCGAGGTTATTGGGGCTTGTGAGGAAGTGTGCATAGAGGAGACAGTTCAAAGTGTCCCCGACACGGATTCAGCAACGGCAAATTTACCTCCAGACACAGAAATACTAATGGTGCCTCAGTCGAGCGATATGGAGTCCATCTACATAGAGGCACAAGACCAGGGGCACGATTATCTCAATATTCAGGTCACAGAGGAGGTGATCACAGACAATTGGGATCGATCAGGTCCAGATGATGGGGTCGAAATTCCAGAGACGAAGGTGTCGCATGATAACTTGTTGGAGTACGATGACATGGAAATTCCTCTGCCAATTGATCAGGATTCGTACACAAATACACGGCCCTACCCGTGTGATTTTTGCAGCCGAAGGTTTCGCAAGAAGGCAAATCTCATGAACCATATGGTTGCTCATCAAACAGATCGTCCGCACGGTTGCAACCTCTGCGGTGCGCGGTACGTTCGCAAATGTGACCTGATGAATCATCTGAAGATTCACGCGTACGCACCGTCTCGTGACGGCCTTGATGATGACCTAAATGACGACGACACACTTGTGGACGAGGAGGAAACAACCAAGGGTCGCCGTAAAAAAGTCCAATCCTCTGCGCCGAGAAAACGAAAGAACAATATGACTGCTACGGCCAAACGTAGTTTAGGTCTTGACGAGGGATCCAAATTGGACGGCGGCAAAATGGGTGGAAAATCGTACGACTACGTCGACGAGGATATGCGTTTGCTGGAGGAGATGTCGACACGAGGAACAGGCTCAGGGAAAAGTGGAAATTTCGCCACCAGTTCGAAATGGACAGACTCAATGATCACAGCAGAGCCTCAGCCACCAAGGTGGCCCATCACTGACCCCACCAAGCCCTACGTCTGTCAGTCCTGCGGAATTGGGTTTGCCAGGGAAAAAGCTATGGAGTCGCATTCACGAATCCACGGTGGAGACAGTTCTTATGATTGTGCCAACTGTGGCGTCGTGTTCTGGGATTTGAATGCTCTTCGTGAGCACACAAGAGTGAAGCACGGAGTTTCTTCAACCGACACCGGAGAATTTGAGACAAGCGAGACGACTTACACGGGTGATGATCGATTTGGTGAATTTTACTGCGTGACCTGTGGCGTTCCCTTTCAACGATTAGATCTTCTCAAGCGTCATCGTAAGATTCACATCAAGCAAGAGGCGGGCGAGGCGCTAGAGGAATCGAATCAGCATCACGTCTGCAATGTCTGTGGAGAGTGGTTTGAAGAGGCACTCGCTCTTTTGGCACACGCAGAACTCCACGCCAGGGCGCCATCGCGACGATGTCTCCTATGTGGCGAGCAATGTCGCGATGATGCCGAAGTAGCTGAGCACGTTCGTCAGAATCACGCCGATGATGCTCCGCCAAATACGTGCACACTCTGTGGCAAAACGTGCAAGGACAAACGAAGTTTGTTGAAGCACTCGTCGGTCCACAATGCTAACAAGACATGTGGCTGCACCACTTGTGGAAAACGCTTCCACAGCCAGGCGCGACTGAATCGACACGAGATGTCACATCGCAACAAGATGGTGGCGTGTGACGAGTGTGGCGAGGAATTCCCAGATGGTCGTGCTCTCGTCAGTCATCGTCACTCACACAACAAGGACTTGGGTGGAAGATCGTTCCCCTGTCGCGAGTGTGGGAAAACGTTTGGCAGTCGTAGCTCGCAGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCAACGAGTCGTTCTCAGAGAGCACGTTCGTGCTCATCACTCTACAGCTGATCCCAAACTCCAGGGCAGTATGAACCCGTTTCTCTGCAAGGTTTGCGGCGATTCCTTCTCTACACCTGAGGAGATTGTGCTGCACATAGTTCAGCATTGCGACGACAACACGGCGCTTCGTCGACAGCCTCAGATTGGACCGAGAAAGTACAAGAGGAGGCGTAAGCTCAAGCCCCATGAGTCTCCTCTGCCAAATCTTGTGCCACAAACCAATGAAAATTATAATATGATGGAAACTGCGTCCGACTCTGACGATAACACAAAGCGAAAACTTGGTAGAAAGAATAAGCAGCATCGTTCAAACGTCGAGGAAGGCTATCAGAATGTACTGAAGAGCTTTGAGAGTTCCTTGCAGAATATTACTTCAATAGTGAATTCGAAGTCGTTGAGTACGGCGAAATCAAAGCTCGCCAAGAAGAAGGTGAAAAAGGAAGAGAAGAAAATTATTGAGACGCCTCCACAGACTCAGTCAGGTCGGCCCAAGATGATACATACTCAAAAAACCCGAGTACCAGTCGAATTGGGAAGCGATGGTGCAAAAAAGGGCCAGAAAACAAAGACAATGGTCACGAGAACACCAAAGGTCATGCCGAATGAGCACAAACTAGGTATTTTTCCTGGAGGCGAGAGAAATCGCCCACGAACGAAAAATGTAAGTTACCACGTCGACGGCAAACTCCAGATAACACCCGCGACATTCTCAAAGCCAAAGGACACGGAAATTGCTACGCAGTCAACGCCAGCGTCGTCATTCGCACAAGTTAACATCAAAATCGAAGGAAGTGGGATGTCGAAAAAAACGACGAACAACCACGAAAACAACAATGGCAACATTGAGAGCATGAGTAAAACCAAGCCTGCGTCACCGGTTAAGAAGAAACCGATTACTCGAGGCAGGGTTGGCGGAAGACGATCAGCGCGACATGTGACAATAAAACAAGAGCCACAGGACGAACCAATGGACGAGGAGTCGCAAGAGGACAATAATTCTGAGGAGCCAGCATCGTCAGTGGTAATGGATCAGTCCGGAGTTGATGATAATAACATGGAGACCTCCTTCGAGGCAAACGCTAATGCCAATGAAGAAGAGGAAGAAGAAGAGGAGCACGAGGCGATTCTTCCTGATCTCGATAACATTAACCACACTGAAGAAATAACCAATAACAAGGTGAAATTAAGCGTCAAAGTTGAATCAACAACGCAGCATCTTCTGCAGAGTGTGTCTGAAGATGTACCAGAGACTATTATACCTGACACCATCGAATATACCTGCGAGATGTGCTCTGCGGTGTTTGCGAGTCGTGCCGAGCTTCTCATTCACGTACCCATACACATTTGA
- Protein Sequence
- MDVSGDLTLQWVEEVGNVIHEEVICGLGDDLAVQDGEVIGACEEVCIEETVQSVPDTDSATANLPPDTEILMVPQSSDMESIYIEAQDQGHDYLNIQVTEEVITDNWDRSGPDDGVEIPETKVSHDNLLEYDDMEIPLPIDQDSYTNTRPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGARYVRKCDLMNHLKIHAYAPSRDGLDDDLNDDDTLVDEEETTKGRRKKVQSSAPRKRKNNMTATAKRSLGLDEGSKLDGGKMGGKSYDYVDEDMRLLEEMSTRGTGSGKSGNFATSSKWTDSMITAEPQPPRWPITDPTKPYVCQSCGIGFAREKAMESHSRIHGGDSSYDCANCGVVFWDLNALREHTRVKHGVSSTDTGEFETSETTYTGDDRFGEFYCVTCGVPFQRLDLLKRHRKIHIKQEAGEALEESNQHHVCNVCGEWFEEALALLAHAELHARAPSRRCLLCGEQCRDDAEVAEHVRQNHADDAPPNTCTLCGKTCKDKRSLLKHSSVHNANKTCGCTTCGKRFHSQARLNRHEMSHRNKMVACDECGEEFPDGRALVSHRHSHNKDLGGRSFPCRECGKTFGSRSSQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQRVVLREHVRAHHSTADPKLQGSMNPFLCKVCGDSFSTPEEIVLHIVQHCDDNTALRRQPQIGPRKYKRRRKLKPHESPLPNLVPQTNENYNMMETASDSDDNTKRKLGRKNKQHRSNVEEGYQNVLKSFESSLQNITSIVNSKSLSTAKSKLAKKKVKKEEKKIIETPPQTQSGRPKMIHTQKTRVPVELGSDGAKKGQKTKTMVTRTPKVMPNEHKLGIFPGGERNRPRTKNVSYHVDGKLQITPATFSKPKDTEIATQSTPASSFAQVNIKIEGSGMSKKTTNNHENNNGNIESMSKTKPASPVKKKPITRGRVGGRRSARHVTIKQEPQDEPMDEESQEDNNSEEPASSVVMDQSGVDDNNMETSFEANANANEEEEEEEEHEAILPDLDNINHTEEITNNKVKLSVKVESTTQHLLQSVSEDVPETIIPDTIEYTCEMCSAVFASRAELLIHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -