Basic Information

Insect: Eumacrocentrus americanus
Gene Symbol: -
Assembly: GCA_018902335.1
Location: JABSMT010016498.1:645-3119[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.8e-05 0.0035 17.8 2.8 1 23 337 359 337 359 0.98

2 9 4.7e-05 0.0043 17.5 2.8 1 23 363 385 363 385 0.98

3 9 0.00012 0.011 16.3 3.6 1 23 390 412 390 412 0.96

4 9 6.7e-05 0.0061 17.0 2.8 1 23 468 490 468 490 0.98

5 9 0.00075 0.069 13.7 1.4 1 23 495 517 495 517 0.97

6 9 9.4e-05 0.0086 16.5 2.2 1 23 566 588 566 588 0.98

7 9 0.00053 0.048 14.2 1.6 2 23 596 617 596 617 0.98

8 9 0.011 1 10.0 0.3 1 17 628 644 628 645 0.92

9 9 8e-05 0.0073 16.8 0.3 1 22 740 761 740 761 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.8e-05	0.0035	17.8	2.8	1	23	337	359	337	359	0.98
2	9	4.7e-05	0.0043	17.5	2.8	1	23	363	385	363	385	0.98
3	9	0.00012	0.011	16.3	3.6	1	23	390	412	390	412	0.96
4	9	6.7e-05	0.0061	17.0	2.8	1	23	468	490	468	490	0.98
5	9	0.00075	0.069	13.7	1.4	1	23	495	517	495	517	0.97
6	9	9.4e-05	0.0086	16.5	2.2	1	23	566	588	566	588	0.98
7	9	0.00053	0.048	14.2	1.6	2	23	596	617	596	617	0.98
8	9	0.011	1	10.0	0.3	1	17	628	644	628	645	0.92
9	9	8e-05	0.0073	16.8	0.3	1	22	740	761	740	761	0.96

Sequence Information

Coding Sequence: ATGACTATGAGTGTCAGCTACTTTGAGTTGCCATCGAACATGGAAAGAGTCTGCAGAATATGTTTGTCTGACGGTACAAACTTGTCGCCAATATTCTGCACTGATCAAGACGTCGAAGATTTCTCGAGTCTTTCACAGAAGATTCAAGCCTGTGGAGCTATTGAAGTTCACGAGAGGGATGGTTTACCCTCGCTGATCTGCGAAGTTTGTATCTACAAAGCAAATGTTGCCCACGAGTTCAGACAACAATGCCAGCACTCTGACGCACGATTACGATTGTTTTATGACAAGCCTACAAGATCGAACGTTGCAGACTCGAGTACACAAACTGATTTGCAAACAAGAATTATCGTGACGAAGAAGATCGACAATTCACAAACGGATTACCTCGTGAAGGAAGAGATGCAGGGACTAAATCAAGAGTTGTCCAACACCATAGAAGTGTACACTCACAGCAACGGATCAGTCGTGTCAGAGACTGAAATAGAGGCTGAAGAAAAGTTATTTCTCTGTAACATTGGATTTGGTGGGACCAAAGAAATGGAGAAAGACACGGTGATCTTGGAGACGCATCAGCATCCCGATGAGACTTGTCCAGTTGACGAGTCCCAGGTCTCACTTGTCACAGCAATGGAGCAGCAGAGTTTGGAGGAGAATGAAGAAGTAACCACAATTACTGAAATGAAAACCAGTGATCCAACAGAGCAATATATCACCGAGCATTTGTTGACTACGTCTACGAGTGCTGATGAAGAGGAAGATGATGTAGCAATAGCTGAAGAAGAAGACGATGAAGAGGAAGAGGAGGAGATCGATAGAAAAGCTATGCAGCAGGAACAAAATCTGGAGCAAGGCGAACAAGAAAATGAAGAGAAATGGGACAAAGTACAGACTGAAGATGAGCCTCTGCCCAAGAGATCGACTAGAAAGGCGAAACCCAGTGCCGGAAAGTCTTACAGTGTTGACGAGATGGACGAGGACTCACAGGACGGAGATGAGGAACCAAAGTTCAAATGCAAAGTCTGCTCTAAACGCTATACGACGCAGAAGGGCTTGAAAAATCACTCTCAAGTGCACGATAAGAAACACAAGTGTCCTATATGTTTCAAATTATTTTACAAGCTAGAAAACCTCGAGAAGCATCAGAAAATTCATGAATCAAAGCCTCACGCTTGCCAACAGTGTCACACCTCATTTGCAAAGCCCCAAAGCTTGGTGAGGCACCTGAAAACTCACTCAGATAAGGATTCAATCAATGGAAACCAAGAAATTAATAGTGGTGATATAAAAGTCGATGGGAACAAGGACATGAAAATGGAAAATGACACAGACGACGATGACGACGACCGAGACTGCTCTCAGATAAATGAGGCAGACGAATTCGACAGTGCCCCAGGACTCTACAAGTGTGACGTTTGCAATCAATTCTGTTCAACGCTGAAGAATCTCAAGAGACACGCACTTGTGCATGGCGACAAGAAGTACTCTTGCACAGTGTGCAAAAAATGGTTTTTCCGACCTGACACGTTGAAGAAGCATGCAGAGAAGCATGGCCATGGGCTGCTCGACAATTTAGTGGACGAGAATAAATTATACGAGTCCGACGACGAGTCATTCAATCGTGGGAATGGTAACACAACAACCAACGATACAACCAAGAGGGAAGAGAGTGACGAGGATGGAGCTTCCGGGGAATACAAGTGTCAGCATTGTGACAAAGTCATGGCAACGAAAAAGGGTCTGAGACGACACGTATCCATGCACAAGCCCAAGGCTGAGCCAGCGACTTGTGAGATCTGCAAGAAAGTTTGCGCTAGCCAGGCCAGACTCGTTCTCCATCAGAAGACCCACAACAAGCCAAAGGAAAAAGTTCCACGAGAGTATCTCTGTCACATCTGCAGCAAGGTCTACCCAAGCAATTCGTCGTTGACCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGTATGTCTGCAAAACTTGTGGTGCTGCCTATAGCCACAGTGGAAGCCTGTTTGCTCATCAGAAACGATGCAGAGCTCAGTACGGAGAGATGGTGACTGACGATCATCATACTCACGTCGCTCATCATATCCACGTGAATAACGTACAATCGGCCGTGAGATCTCTCGCTGTCATCGGTCAGATGTTTTGA
Protein Sequence: MTMSVSYFELPSNMERVCRICLSDGTNLSPIFCTDQDVEDFSSLSQKIQACGAIEVHERDGLPSLICEVCIYKANVAHEFRQQCQHSDARLRLFYDKPTRSNVADSSTQTDLQTRIIVTKKIDNSQTDYLVKEEMQGLNQELSNTIEVYTHSNGSVVSETEIEAEEKLFLCNIGFGGTKEMEKDTVILETHQHPDETCPVDESQVSLVTAMEQQSLEENEEVTTITEMKTSDPTEQYITEHLLTTSTSADEEEDDVAIAEEEDDEEEEEEIDRKAMQQEQNLEQGEQENEEKWDKVQTEDEPLPKRSTRKAKPSAGKSYSVDEMDEDSQDGDEEPKFKCKVCSKRYTTQKGLKNHSQVHDKKHKCPICFKLFYKLENLEKHQKIHESKPHACQQCHTSFAKPQSLVRHLKTHSDKDSINGNQEINSGDIKVDGNKDMKMENDTDDDDDDRDCSQINEADEFDSAPGLYKCDVCNQFCSTLKNLKRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDENKLYESDDESFNRGNGNTTTNDTTKREESDEDGASGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPATCEICKKVCASQARLVLHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMVTDDHHTHVAHHIHVNNVQSAVRSLAVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -