Eame013475.1
Basic Information
- Insect
- Eumacrocentrus americanus
- Gene Symbol
- -
- Assembly
- GCA_018902335.1
- Location
- JABSMT010009078.1:6259-8454[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.007 0.65 10.6 3.6 1 23 177 199 177 199 0.98 2 12 4.9e-05 0.0046 17.4 1.8 2 23 206 228 205 228 0.94 3 12 0.00086 0.079 13.5 0.4 1 23 234 256 234 256 0.98 4 12 0.00018 0.016 15.7 1.9 1 23 262 284 262 284 0.98 5 12 0.42 39 5.1 8.3 1 23 290 312 290 312 0.97 6 12 6.3e-05 0.0058 17.1 0.7 1 23 418 440 418 440 0.98 7 12 0.00025 0.023 15.2 3.6 1 23 446 469 446 469 0.97 8 12 2e-05 0.0019 18.6 0.7 1 23 475 497 475 497 0.97 9 12 1.5e-06 0.00014 22.2 0.8 1 23 503 525 503 525 0.98 10 12 0.00045 0.041 14.4 2.4 1 23 531 553 531 553 0.98 11 12 1.2e-06 0.00011 22.4 1.2 1 23 559 581 559 581 0.97 12 12 5.1e-06 0.00047 20.5 0.5 1 23 587 610 587 610 0.97
Sequence Information
- Coding Sequence
- ATGTGCACGAAAATCCTCAGAAGGTTCCATATTCATGTGTGGTCCACTATTTCCTCAAAAGCATTATCTCGAGGATCACTATCGTCACGTGCACAAAATGCATTAATCACCAAAGATATCATAGAAGAACATTTGTTTTCCAGGTATCAAGGTGAAGCTACAGAGGATGCAGGGTTTATTGCAACTGTTCAATCAATTGAAGATGAAGAGACTGAAGCAGAGTGTGACGGCCGTGAAAGGAGATTTAGCAGTATTAAACAATTTCAGGAAAAAGAATTTCAGCAACACGTGGATAGTCATAGAGTGCAGATAGACGCAAATAGCATGAAGAATAATCCTCAGATGAATGAAGCCTCTGTAAGGGATGGGGAACAACGACTTGACTACATCTACAAGGAGTGTGAAAAAGATGTTGCTGAGAAACAAACCTCGAAACGACACTTGAATGCTCATGAAGACAGAGAAAAGCTTGTCGTAGAGCAGAACATTGTCGACAAGGCAAAGTTATTAATGAACAACAGAGTCGGATTTCGATGTGATCAATGTCATAAAATAATGTTTACTAAACGTGGATTTCTGCGGCATATTCGTGTCCACGCTGGCGACCGTCCATGCGTCTGTTCAACGTGTGGAAAGACCTACAGAATGGATCAAGACTTGAATAGACACATGAGAGATGTTCATGAAGGCCTTAAGAATTATATCTGCGACATATGCCAGCGAGCTTTTGCAAATAAGAATACCAGGGATGATCATCGGCGAATCCACACTGGAGAACGACCCTATAGCTGTAGTTACTGTTCTAAAACCTTTCGAACGTTGAATGCTGTCTATATCCACAATCGGACTCATACGGATTACAAGCCACATGAATGTTCAACCTGTGGCCAACACTTTCGATGTCAAACGAAGCTCGATCAACATATGACTAGGCACACAGACATCAAAGCATTTGTAATCGTCGATTTCATATCCGGATTTCCAGATTTTCAAAAAGCCTACACAGCGTTTTTATCGTCTACTCAGAATAAAACACTAAGAATCATCAAGAATACCTTGAATTATCGTGCTTCAACTCCAGAGAAGAATAAAATTAAATCAAATAAAGTCGAAGATATTCCATCAGTCGATGAAAATGCTGCAGAAAAGCCTAGTAGAGAATCTTTAGACGATAGAACGACGCGTAAAGCAGGAAAGAATTCTTTAAAATCCCAGGAAACTCAATCTGAAAAGCAGGAAGACAAACAACCATTTATATGCACATTGTGCGGTAAAAGCTTTCGGCTGCAAGAAATCTATAACACGCATATGAGAGTCCATACAGGTGAGAAGATGTTCACGTGCCACGTGTGTGGAAAGCAATTTGGACAGACTGGAAGTCTTTACTACCATTTGCGACACGTGCATGGAGGCGTAAAGAATCACTCGTGTGATCTATGTGGCAGATCTTTCGCAATGAAATCAGCCATGGAAGATCATCGAAGAATCCATACAGGCGAACGTCCCTACGTGTGTGACTCTTGTGGCAAAACCTTCAAGACCAAAGCATCTCTGTATATCCATGGGAAAACTCATTCAGATCAGTATCCCTTCAAGTGTACGCACTGCAAAAAGGCATTTCGAATGAGACAACCATTACTTGGACACATGACAATTCATACTGGCGAGAAGAATCACATCTGCGATGTCTGTGGCAAATCTTTTGGAGTCAAGTATGACTTGACGAGGCACAAACGAATTCATTCTCAAGACAAGCCTTACGTGTGCGAGCAGTGTGGAGTCAGCTTTGCACAGAAACGTTATTTACGCAGTCACGAACGTATTAGGCACAAGTAA
- Protein Sequence
- MCTKILRRFHIHVWSTISSKALSRGSLSSRAQNALITKDIIEEHLFSRYQGEATEDAGFIATVQSIEDEETEAECDGRERRFSSIKQFQEKEFQQHVDSHRVQIDANSMKNNPQMNEASVRDGEQRLDYIYKECEKDVAEKQTSKRHLNAHEDREKLVVEQNIVDKAKLLMNNRVGFRCDQCHKIMFTKRGFLRHIRVHAGDRPCVCSTCGKTYRMDQDLNRHMRDVHEGLKNYICDICQRAFANKNTRDDHRRIHTGERPYSCSYCSKTFRTLNAVYIHNRTHTDYKPHECSTCGQHFRCQTKLDQHMTRHTDIKAFVIVDFISGFPDFQKAYTAFLSSTQNKTLRIIKNTLNYRASTPEKNKIKSNKVEDIPSVDENAAEKPSRESLDDRTTRKAGKNSLKSQETQSEKQEDKQPFICTLCGKSFRLQEIYNTHMRVHTGEKMFTCHVCGKQFGQTGSLYYHLRHVHGGVKNHSCDLCGRSFAMKSAMEDHRRIHTGERPYVCDSCGKTFKTKASLYIHGKTHSDQYPFKCTHCKKAFRMRQPLLGHMTIHTGEKNHICDVCGKSFGVKYDLTRHKRIHSQDKPYVCEQCGVSFAQKRYLRSHERIRHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -