Eame013043.1
Basic Information
- Insect
- Eumacrocentrus americanus
- Gene Symbol
- -
- Assembly
- GCA_018902335.1
- Location
- JABSMT010051332.1:365-3842[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.72 66 4.3 2.3 1 23 301 323 301 323 0.90 2 12 0.0017 0.15 12.6 1.0 1 22 328 349 328 352 0.91 3 12 0.034 3.2 8.5 1.4 1 23 434 457 434 457 0.93 4 12 4e-07 3.7e-05 24.0 1.5 1 23 463 485 463 485 0.99 5 12 0.0038 0.35 11.5 0.1 1 23 494 517 494 517 0.89 6 12 2.2e-07 2e-05 24.8 3.6 1 23 523 545 523 545 0.98 7 12 2.4e-06 0.00022 21.5 1.0 1 23 551 573 551 573 0.98 8 12 1.1e-05 0.00099 19.5 1.7 1 23 579 601 579 601 0.98 9 12 1.1e-08 1e-06 28.9 0.6 1 23 607 629 607 629 0.99 10 12 3.4e-06 0.00031 21.1 5.0 1 23 635 657 635 657 0.98 11 12 6.3e-05 0.0058 17.1 0.8 1 21 691 711 691 712 0.96 12 12 1.4 1.3e+02 3.4 0.1 12 23 730 741 729 741 0.90
Sequence Information
- Coding Sequence
- ATGGCGGAAGTATCTCTCTATGATTCGGCTATTTGTCGATTATGTGCTGACAATAATGCGAACGGAGAATTATTGTATACGTGTGATGGTGAGGAGTCCGATTTGAGCTCTATGGTGAATCGCTACTTGCCACTCAAGATTAGAGACGATGGCAGACTACCGAGGACCATCTGTCCAGGATGCCATATCCAACTGGATTCAACAGTACAATTTTTCCAATTATTGGTTAATGGTCAACAAAAAATCCGCGAGTTATGGAAGCAACAGTTAGAACACCAGAGAAAGGCTGATCGTGAACGTCTTCGAGTCGAGAGGGAAAATACAGAGTTGGCCATCGAAACACCAGAGCTCGATGACTATGAACAAACTCATGAAGATGAACCATTTTCACAACAAATTATTATTAAAATCATGCCTGATGGCTCCATGTATGCTGCTGAACATGATATGAGTTTACAAATGGAGGGCTTAGAGAAACCACGACGAAAACGTGGACGCCCTCCAAAAATTCAAGCAGACGATGACGTAAGAGGAGATGAAGAAGCTCAAGATGGTGCAAGTCAAGGGGAGGATGATAAGCAAGATGAAGAAGAGGAGTTGGATGGGGATGGAAGACGTAGGAGAAAGCGTAAAGTCCCAAAGCGATTCTCTGAAGCAGTGCAAGGCAAAGAATTAGAGAGAATATTCAAAGAAGAAGGGGTTATCGACGATGAAGAAGAGGAGGATATAGACCGCGACTATGACGATATTGAGGAACGATCAAATATACCAATACCCGATGCCAATGAAGAGGTAATTGGGCATTTAGAAACCGAGGAAGGAAAAGATCTAGGAGAGTTGATAATCGTGAACCGTGGCCGAGGTCGGGGAAGACCGAAGCAACGTCGAAAAAAGACGAAATTCACGTGCAACTTGTGTAATCGAGGTTTCCTGCAACGCAGTCGATACATTATGCACAAGAGTTTCCACAAAAGCGTAAGATACGAATGTTTAGAGTGTAATCGAATATTTACAAATGTAGAAAAGTTTAAACTCCATCAAAAAAATGCACGCCACGCTGGTGAACACATAATTAAACATCGTGAAGATGAGGCTAAGGATCCCCTCCAGGGCGATTTCACCGAGACACAAACTGATAATAATACGTGTGAGAAAGCTCCAGCGGAAGAAATTCGTGCAGAATCACCACCAAAACCGTCACAGTATACAAAAATAGAAGTTCAAGAGTCATTGGATGCCGTAGCAACAGTATCATCATCACCACCACCAGACATAAAATTGGCACATGACATACAATTTTTTGATTGTGACCAGTGTGATGAAAAATTTCAGTCAAAAGACGATTGCGAGGTACACATCAAAGACAATCACGAGACTGGGAAGCCCTATGTCTGCAACATCTGCGATAAGACCTTCCCTTATCATTCAAGTCTAAAGGGACACATGTTAACGCATGAACCATCGAAAGCAGAGAAAGGATTTGCGTGTGATATTTGTGGAAAAGTTCTGAATCACCCTAGCTCGGTGATTTATCATAAAGAAGCAGAGCACAATAATGGTCGACGATTCGTTTGCAACAAATGTGGAAAGAGTTTCAAGCATAAGCAGCTACTGCAGCGTCATCAACTAGTTCACTCGGAAGACAGACCATACGTTTGTAAATCTTGTAATGCAAGTTTCAAGACAAAAGCCAATTTAATTAATCATCAGTCGACACACACGGGCGAAAAGAAATATTCATGCGATATTTGTGGCCAACAATTTGCTCACAAGACCAGCTTAACATTACACTATCGATGGCACACTGGTCACAAGCCATATACGTGTGACGTCTGTCAAAAAAGCTTCTCGCAAAATGGCAATCTTCAGGAGCACATGCGCATCCATACAGGAGAAAAACCATATTCTTGTGATCATTGTGGTCGCAAATTCACGACTTCCTCGCAGTTTAAGCTCCACGTTAAACGCCACACAGGTGAACGGCCGTGGAAATGTGAATTCTGTGCCAAGAGCTTCTTGCACAAAGACACATGGAAATGTCACGTACGCAGACACAAAGGAGAACGCCCATTCCAATGTGCTCATTGCAATCGTGGTTTCACGGAGCAGTGGGCCTTAAAAAAACATCTTCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGATTGTTCCAATTTGACAAAACACAAAAAGGTACACAGAGAAAATAAAGTGTTGGGTATAAATAATTTATCAAAAGCAGCCTCTTCAGCTGGTGAACTCTGGCAAATACTTCCAGCAAGTCAAGACGGTGATGAGAATTCACTTGGTGATCACATTACTCAAGTGATTGCTACTGAAGGAGGAGCAGAGGATGGAGTACCACAAATAATTTATGTTTCTTATCAGGATCCTGATGATCCCAATCAATCAAGAACGTTGCATTTCGGAATGCTTGAAGATAAAGAGGCAGCGGCAACTGGCCAGTCTCTGCCATCGTTAGATGTTGAGGACAATGAAATGATAGTAAAGCATACTTCACATATAACTCAACAATCTGATGAGCACATAGAGATGGATTTATCTGAGACAAACCTCCAGCTCCAGATCACCGATGAAGATGGCAATCCAATTCCCCTATCGATACAGGATGCTCGACAGTTACTAGCTGAGGGACAATTCGTCAGTCATTTGAATGATGGACAAACGATAAGAGTACATTCAAGTGTCGTTCCTGAAGAATTAGCAGAGCAGCTGGGAGTTCATGTCCATCAAGCCATCAATATCGATAGCATAAATAACATGGAAAATGAAGCAGCAACATCGGTTATCGACACGTCAGTATCACAAATTAATGCTGGTGAAATAGTCAAAGGACTTAGAGATAAAGAAACTGTAGTGGAGAATGTTACAGCAGTAAGTGAAATTTCTGCTGATGCAGCTCCTGATTTAGCTGATGGTGAGCAGACGATTGAATTTACCACTCCGGATGGGCAGAAAGTACGACTAGTCACGTCGTATCATTCCGATCCATTACAAATCGCCTCTGAATATCTGACCATAGTTTAG
- Protein Sequence
- MAEVSLYDSAICRLCADNNANGELLYTCDGEESDLSSMVNRYLPLKIRDDGRLPRTICPGCHIQLDSTVQFFQLLVNGQQKIRELWKQQLEHQRKADRERLRVERENTELAIETPELDDYEQTHEDEPFSQQIIIKIMPDGSMYAAEHDMSLQMEGLEKPRRKRGRPPKIQADDDVRGDEEAQDGASQGEDDKQDEEEELDGDGRRRRKRKVPKRFSEAVQGKELERIFKEEGVIDDEEEEDIDRDYDDIEERSNIPIPDANEEVIGHLETEEGKDLGELIIVNRGRGRGRPKQRRKKTKFTCNLCNRGFLQRSRYIMHKSFHKSVRYECLECNRIFTNVEKFKLHQKNARHAGEHIIKHREDEAKDPLQGDFTETQTDNNTCEKAPAEEIRAESPPKPSQYTKIEVQESLDAVATVSSSPPPDIKLAHDIQFFDCDQCDEKFQSKDDCEVHIKDNHETGKPYVCNICDKTFPYHSSLKGHMLTHEPSKAEKGFACDICGKVLNHPSSVIYHKEAEHNNGRRFVCNKCGKSFKHKQLLQRHQLVHSEDRPYVCKSCNASFKTKANLINHQSTHTGEKKYSCDICGQQFAHKTSLTLHYRWHTGHKPYTCDVCQKSFSQNGNLQEHMRIHTGEKPYSCDHCGRKFTTSSQFKLHVKRHTGERPWKCEFCAKSFLHKDTWKCHVRRHKGERPFQCAHCNRGFTEQWALKKHLRXXXXXXXXXXXXXXXXXADCSNLTKHKKVHRENKVLGINNLSKAASSAGELWQILPASQDGDENSLGDHITQVIATEGGAEDGVPQIIYVSYQDPDDPNQSRTLHFGMLEDKEAAATGQSLPSLDVEDNEMIVKHTSHITQQSDEHIEMDLSETNLQLQITDEDGNPIPLSIQDARQLLAEGQFVSHLNDGQTIRVHSSVVPEELAEQLGVHVHQAINIDSINNMENEAATSVIDTSVSQINAGEIVKGLRDKETVVENVTAVSEISADAAPDLADGEQTIEFTTPDGQKVRLVTSYHSDPLQIASEYLTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -