Eame002135.1
Basic Information
- Insect
- Eumacrocentrus americanus
- Gene Symbol
- -
- Assembly
- GCA_018902335.1
- Location
- JABSMT010029714.1:1059-5109[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.6 1.4e+02 3.3 4.5 2 23 254 276 253 276 0.94 2 21 0.014 1.3 9.7 1.8 1 23 354 376 354 376 0.97 3 21 0.052 4.8 7.9 0.4 1 23 425 447 425 447 0.98 4 21 0.0024 0.22 12.1 0.4 1 20 490 509 490 511 0.95 5 21 0.28 25 5.6 2.5 1 23 523 546 523 546 0.92 6 21 0.025 2.3 8.9 2.2 2 23 552 573 551 573 0.96 7 21 3.4e-05 0.0031 17.9 0.2 1 23 594 616 594 616 0.98 8 21 8.7e-05 0.008 16.6 0.4 1 23 622 644 622 644 0.97 9 21 2.9e-06 0.00027 21.3 0.1 2 23 684 706 683 706 0.96 10 21 0.046 4.2 8.1 2.3 1 19 712 730 712 735 0.89 11 21 0.0015 0.14 12.7 3.8 1 23 743 766 743 766 0.96 12 21 0.00074 0.068 13.7 0.4 3 23 775 795 773 795 0.93 13 21 0.037 3.4 8.4 0.1 2 20 854 872 853 872 0.95 14 21 0.014 1.3 9.7 0.8 2 23 891 912 890 912 0.96 15 21 6.3e-05 0.0058 17.1 0.4 2 23 930 951 929 951 0.96 16 21 0.00092 0.085 13.4 0.1 1 23 972 995 972 995 0.90 17 21 0.065 6 7.6 0.3 2 23 1056 1078 1055 1078 0.95 18 21 0.00013 0.012 16.1 0.3 2 23 1102 1124 1101 1124 0.94 19 21 0.025 2.3 8.9 0.2 1 23 1130 1154 1130 1154 0.97 20 21 0.0029 0.26 11.9 1.2 1 23 1159 1182 1159 1182 0.97 21 21 0.067 6.2 7.6 0.0 2 23 1212 1234 1212 1234 0.93
Sequence Information
- Coding Sequence
- ATGGATGATGTTGTCGAGCTGAATAACGTTAAGAATTTGTGCAGACTGTGTCTATCAACGGATGAGCCAAGATCGCCAATATTTGGCGTCCAAGAGTCGTCGGTGCCATTGGCGGACAAAATACAAGCCTGTTTGTCCATTGAAATTTTGTCCAATGACAAATTGTCAACGTTGATATGTGTAAATTGTGTGAAGAGCGTCAATCAATGGCACACCTACAAGGAATCATGTCTGAAGTCCCAAGAGAAGCTCGAGAGATGGCTTGTCAATCAGACAAATCCAATGGCAACAGTTATTGCAACGATAAAGCCAGAGCCAGTAGACGTGGAAGTCTACGAGGACAATATCGAGGTTGTCGAGATGTCCGAGGACGAATCTTCACCCTTGAATGATCGTGAGAATGAAGTCCCTTCGACGGAGAGTTCAAATAATAAGAATGCCGAAGTCTCTCGGAGAGAGAGTAGATCACGTCGTGGGGCAGTGAACAATTCGGGTAATCAACAGAAAAATGCCTCATCTGAACGACTATTGGAACCACCTGAGGTGAAGATTGAACCTTTGGACGATGAGGATGCTGAGTGTAGCATGGAAAATGACTCAACTGCTGAAGGGGAATTATTAATTAATCCAATGGCTTTGGGAGCGAATAAAAACATAGAGCCAGACTCGACACAGAAGTTCAATGCCGCTCGATCAGCAAAGAAGAAGGTTCGACGTGGGCCTCACACACATTTTCGAGGGATTAAAGTTTACAAACAGAGATGTCCTCATTGTCACCTGAATTTACATTCAAAAACAGCTTATGCCAAGCACGTGGCGAGATATCATCGTGATAGGACTGCAAATCCTGCTACAGCTTCAAACAATTCTACGGAACCTTTAAGTCCACGTAATGGTGGTCTTGCATACACTGATAAAGATGTCCAAGAAGAATCTCCATCAGCTGTCGAAGAAGAGGAAGAAGAAATGATTGAGGACGTGGAGGAAGAGTTGGTTAGCTTAGAGAAAGATGCTCCATTGACTCAAGTCCAAGAGTCAATTATCAGCCAATTGAAGACTTTCTCGTGCTATGCATGCCAACAATCCTTCAGTGATAGACGTAGCACACTCAATCACATTCGACAGCACATGCCAGACCTGAGACCCTACACTTGTATTGCCTGTCTCACAGAGTTCCCAGATCGATCGATCTACAAGCTTCACTGTGGTGCCTCCTTCGAGTGCGCCATGAAGATAGCTCTGGTGGTGCCCAAGCATGGCACAGAGAAGTACTTCACCTGTAACATGTGCCTGAGGCCAATGCCGAATCGTAAAGAGCTCATTAGTCACCTATCAAAGCACTCTGATCGTCAATATGAGCAGCTAACGAACCCCACCAAGTCTCCGCCGAAATTAAGGCCAATGACGTCTGTATCCAAGGCCGCTAGTAGCATTGGCCCCTACAGAAACGGTGACCCAGCTCACAATCACACGTGTGACTACTGTGGAATGATTTACAGATACAAACCGAATATGGTGAAGCATCAGGACCTCTGCAAACGTCTACCACCTGAAGAAAGAACCTCATATCGATGTGTTCACTGTGGAATGACGTTTCTTGTCTTCAAAAAATTCCAAACTCACCTCGTCACCGAGCATAATAAGAAAGAGATTGTGTGCTTCGATTGTAATGCAAAGTTTAGATTCTCTAATGAGTTTCTAATTCATCATCAGAAGCACAGAATCAAAAATAAATCATCAGGAGGTGAAGCTCAAAATCATTGGGAGAAAGATACTAAATTCAGTTGTGCTGTTTGCTCTGAGGAATTTTCAACGAGATCAGAGTTAGCTGAGCACAGAAATACACATTTAAAGGTCAAAATATTCTCGTGCACTGTTTGTCGACGAATGTTTGGCAATTCTCAGGCATTGCAGGAGCACATGAACGAGCATGGACCCACTGAATTGGATCCCAATACCTCAACAACGGATTTTCTCAATCAAACTGAATCAGAAGATCGAAATGTTACTACGTGGTCAGCGAACAGTGACCCCAGTGGACGTAGCACAGAGTGCACGGCTTGTGGAAAGGTTTTTGCCAATTATCCAAACCTCAGACGACACATCAGGTCAGCACACTCAGGGACTGATCGATTCAGCTGCTTCAAGTGCTCCAAGACATTCATAAACGAAGACGAATGGACTGACCACTGTGAGCGAGCTCACAAAGAGTCGTCAGCTCTCACGCATCGTTGTGGCTACTGCAAGAAGCGATTTGAAACGAGAGAGGCAGTGGAGCAGCATCATAGAAACGCCCATGGTATCACTGAGGACTGTATGGCTTGTGACATTTGTGGCAAAGAATTTGGCAACGAAACATCACTAAAAATCCATCGAGGACATCACTTCAGGCGTGACTCGAGGCTCAGCATCAGGAATATGCCTCATCCAATGGATCAAGTCCAAGTGGAGATCAACGATGAGCCAATGACATCGCCCATGTCGAGTCCGAAGTCTTCATCACGAGCCAGGAAATCATTTTCCAATGGCTCGTCACCAAGAGCCACGTCAGGCAATTTGCAGTGCCAAGTCTGCGACGATCGATTCACCGACGTTCAAGATCTTCGTAAACATTTGTGGGACGTCCATTGTGCCAAGAACAAGCCCGAGAAGTCGTTCACAGGCGAGTTGCAGTGTGAATTATGTACGAATCTGTTCCCTGACCACAAGAGCCTCGAGGACCACATGAAGTGGCACAAAGACAATCCAATTCTCTCTGATGGTGGTCTACAACGTCCTGTTGACATTTCCTGTGACATCTGTGGCAAGTTCTACAGCTCACTGAAGGCCCTGTGGAAGCACAAAAAGCTCCACAAGGTAACAGCACCAGCTGGCATTAAATTCCAGTCTGTGAAGAAGCCGCTGCCCACTCAATTTCCCTGTCCTGTGTGTCGTAAGGTCTTTGGCAATGAGACATCGATGAAGAAACACAAAGCAGCAGCTCACTACATTCGTCGTACCATCTCAGGATCGTCACCAGCACGAAAACCGTCCACAAGTCATGAAGAAGACGACATCAAGCCTAAGAGACCTAAGCTCGACTTTGACATAATACGAAAAGCCTATAATCTAGGAGAGCCATCAAGCAGCAGTTACAACAGCAATAACTCAACGAAGAAGCCTGTTACCTGTGGCATATGCAAGAAATTATTGCCCAGCATGAGTTCATTGTACAAGCACAGGCAAAATGTGCATAAACAGGACCTCAACAAGTCTCTTCCAAATCCAATCAGTGAGGATGTCACTGATGAAAGCTCAGGCGTGCCTTGCACTGACTGCGACAAGATCTTTTCGAGTATGGGTAACATGAAACAGCACTACACAAAGGTCCATGGAGGTGGTGGAAAGTATTACTGCAACATGGATGGTTGTAATGAAGTATTTAGCTCACCACTAGCCAAGCAGACTCATGAGAAGTCGCACATGAACATGCTCTACAGCTGTAATATTTGTTCAAAACACGTTTTCACACGTGGTGCTATGACTAAGCATCTTGCCACTGAACATAAGTCTGAGTATCAGCCGAATTTGGAGAAGAACCTCTACAGGAAAACAGACCTGAATAATTACGTTGTCAAAGGGGCCGAAGGAAGAGTTTGTCCTATTTGTAAAATCACTTATCCCAATATCAAAGCCATGAAGATCCATTATGTGAAGATCCACGAGAGCAATAGCTAA
- Protein Sequence
- MDDVVELNNVKNLCRLCLSTDEPRSPIFGVQESSVPLADKIQACLSIEILSNDKLSTLICVNCVKSVNQWHTYKESCLKSQEKLERWLVNQTNPMATVIATIKPEPVDVEVYEDNIEVVEMSEDESSPLNDRENEVPSTESSNNKNAEVSRRESRSRRGAVNNSGNQQKNASSERLLEPPEVKIEPLDDEDAECSMENDSTAEGELLINPMALGANKNIEPDSTQKFNAARSAKKKVRRGPHTHFRGIKVYKQRCPHCHLNLHSKTAYAKHVARYHRDRTANPATASNNSTEPLSPRNGGLAYTDKDVQEESPSAVEEEEEEMIEDVEEELVSLEKDAPLTQVQESIISQLKTFSCYACQQSFSDRRSTLNHIRQHMPDLRPYTCIACLTEFPDRSIYKLHCGASFECAMKIALVVPKHGTEKYFTCNMCLRPMPNRKELISHLSKHSDRQYEQLTNPTKSPPKLRPMTSVSKAASSIGPYRNGDPAHNHTCDYCGMIYRYKPNMVKHQDLCKRLPPEERTSYRCVHCGMTFLVFKKFQTHLVTEHNKKEIVCFDCNAKFRFSNEFLIHHQKHRIKNKSSGGEAQNHWEKDTKFSCAVCSEEFSTRSELAEHRNTHLKVKIFSCTVCRRMFGNSQALQEHMNEHGPTELDPNTSTTDFLNQTESEDRNVTTWSANSDPSGRSTECTACGKVFANYPNLRRHIRSAHSGTDRFSCFKCSKTFINEDEWTDHCERAHKESSALTHRCGYCKKRFETREAVEQHHRNAHGITEDCMACDICGKEFGNETSLKIHRGHHFRRDSRLSIRNMPHPMDQVQVEINDEPMTSPMSSPKSSSRARKSFSNGSSPRATSGNLQCQVCDDRFTDVQDLRKHLWDVHCAKNKPEKSFTGELQCELCTNLFPDHKSLEDHMKWHKDNPILSDGGLQRPVDISCDICGKFYSSLKALWKHKKLHKVTAPAGIKFQSVKKPLPTQFPCPVCRKVFGNETSMKKHKAAAHYIRRTISGSSPARKPSTSHEEDDIKPKRPKLDFDIIRKAYNLGEPSSSSYNSNNSTKKPVTCGICKKLLPSMSSLYKHRQNVHKQDLNKSLPNPISEDVTDESSGVPCTDCDKIFSSMGNMKQHYTKVHGGGGKYYCNMDGCNEVFSSPLAKQTHEKSHMNMLYSCNICSKHVFTRGAMTKHLATEHKSEYQPNLEKNLYRKTDLNNYVVKGAEGRVCPICKITYPNIKAMKIHYVKIHESNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -