Eame013902.1
Basic Information
- Insect
- Eumacrocentrus americanus
- Gene Symbol
- gfi1b
- Assembly
- GCA_018902335.1
- Location
- JABSMT010043768.1:4308-7676[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.03 2.7 8.7 1.6 2 23 495 517 495 517 0.93 2 14 0.0002 0.018 15.5 0.1 1 23 524 546 524 546 0.98 3 14 5e-06 0.00046 20.6 2.6 1 23 552 574 552 574 0.96 4 14 0.00026 0.024 15.1 1.9 1 23 583 605 583 605 0.97 5 14 3.8e-06 0.00035 20.9 0.8 1 23 611 633 611 633 0.98 6 14 1.1e-06 0.0001 22.6 0.3 1 23 638 660 638 660 0.98 7 14 0.0036 0.33 11.5 4.5 1 23 667 689 667 689 0.98 8 14 0.00045 0.041 14.4 0.1 2 23 709 730 708 730 0.97 9 14 0.0002 0.018 15.5 0.4 2 23 738 760 737 760 0.96 10 14 0.024 2.2 9.0 0.4 1 23 766 788 766 788 0.96 11 14 0.002 0.19 12.3 3.5 1 23 794 816 794 816 0.98 12 14 6e-06 0.00056 20.3 1.2 1 23 822 844 822 844 0.98 13 14 2.4e-06 0.00022 21.5 1.9 1 23 850 872 850 872 0.98 14 14 0.0044 0.4 11.3 0.0 2 23 879 901 878 901 0.95
Sequence Information
- Coding Sequence
- ATGAAGATTGTTTGTGCCGCAACGTCATGCAAATTTTCTTCAGAAACTGAAGATTCAAGCAATATCATTTTTATCAGCTTTCCCAATGACGACACATCTACAGCTTGGGCACACAATTGCGGCCGGCCGGACTTGATGATTAAATCCAATGAAGAATTGCACGGCAATTATTACATATGTTCGAATCATATTGAAGAGCGTTTTTTTCTGAGCAAAACAAATGAGATTATCATTGCTCAAGGAACTGTACCAAGCCTATTTGGTATTAATAGTGAATCATCAGAGCATTTTCATTCGTTAAAGGAACAATATTCGTCTAATCATGTTATAGATTCGCTGCAGTTGGATAATTGTATTAATGCTGTAGATAATTCGTGTCCATCGAATTATGTGGATACAGCAAGCTCTGAGTATCAAAGCACAATTTACAATTCTGATTTACACCATGAAGACAATCACATAGATGGTATTAGTAGACATGAAGAGACAGAGGTTGAAGATAATAATTTGAATTTTTGCAATATCAATATCAATATTGACCAATTGGAAGGCATGACAATAAGATTTACGAATTTGTGTCGAATTTGTGGTCAATCAACATCCAATGGAATGGATATTTTCATTGGAAAGGGCAGTGAACTGAAAGTCAAGGATAAAATCCATCTGCATTTGCCAATATTAGTTGAAAATGATGATCCAATGCCACAACTAATGTGTTCAGATTGTTATGAAAAGTTGGAGGTCTTTCATTCATTGGTTGTGACATGTCTGCAAACAGATATCAGATTGAGAAAATATTTGAATATCCCTAGCAAGTACAATCATGAAGATAAATTTCGTGATCTAATATCTTTGCATGAACTGGAAATAAACGAGGAATTGGGTGTTGATGTTGTTTCATCCGTAGAAGAAATACCAATTATCGAGGATAAATCAAAGAATGTCACTTCCGTAAATGGATTTAATGTAGGAGTTAATAAAAATTCAGTCTCGCACGAAATGCAGGATAGTCAGTCTACCATTCAATGTAGTGACAATAATTTAACGTCCACAAAGCTAGATAGTGGCTTGAAATTTGTTTTTCATTCAGATTTGAATAATCTGCTACTACAACCTTTACAGTCTCTGACAAATCCTAGCATTTCAAGCAACTCATCAACAATGTCGATTGCAGACGATACAGATCTTGTTGAAAGTAAAGAAAATGAACACCTCGATTGTTTAGACAATAATAATAGATTCCAAAGTCAATGTGACGATGACCGACCATTACCTGTGACAGAGAATAATACTCAAGTAGTTTGTGCAGTGACTGAAGGCATTTTTGAGCAAGACAAATCTCTCCAAGATCACAGACATTTATATGAAGAGCCTCTACCAAAATTGAACAATGTGAAATCTGAAGAGACATTTGATGAACAAGAAGATTTGGGCCTACATAAACAATTTCATTCGAAAACGAAAACTCCTGAAAAGAAACGAAGATGTGGTCACTGTTCTTTTGCTTTGAGCAGTCGCAAAGAATTGCAAACTCATATAACGGAAAATCACACTGGTCAACAGATGCTATTTAAGTGTGGTTCGTGCGACAAAATTTACGAAAGATGGTCTAGCTTAGACGTTCATGAGGCTACCCACAGACAAGATAAACCCTACCTCTGTGATCTCTGTGGGAAAAGCTTCAAACATTCCAATAATTTGAGAGGCCACAAACGAATACACTTGGACATATCAAAAAAGAAGAGACACGTTTGCGAGGTCTGTGGCAATGCATTTAGATCAAGATTTCATCTTGGTGAACACATGAACCAGCATGATGGCAATAAGCCATACATATGTGAACAATGTGGAAAGGCTTTCTCAAAACGAATACAATTGCGACAGCATCGACTTTCCCATGGAATAAATAAATATGCCTGTCCAATTTGTGGCGTAACATTCAATCGTAGAGGAAACATGAATACCCATTTGAAGCGGCACAGCAATCACGATGGGATGTACACCTGTAGTGTTTGTGAATATAAATGTAAATCAATGAGTGAATTAAAGATGCATCGAAAGCAGCACTCCGAAGATGATATATTGGAAAGTATTAAAAAGAAATGTAATGACGAAACTCTGTGGCAATGCAAAGTATGCTCTCGAATATTTGCAAAACGTGCGGCATTATTAAGTCATGAACGTATACACGATAGCGATCAAGTAAGAGTCGAATGTGATAAATGTGGAAAGAAATTGGCTAGTAAAGGTTCATTGAAATATCATACTAAATCTGTACATACATCAGAACGCCCGCACATGTGCCAATATTGTGGTGATGCTTTTGTTACAAAAGAAGCTAGACTGATTCACGAGAGAATACACACTGGCGAACGACCTTATGTTTGTAAATTATGCAACATGCAATATAGGTGCTCAAGTAATCTCAGTCAGCACATGAAAGTTCATTCCGAAATCCGACCTTATGCATGTCAATATTGCCATAAAGCTTTCACACGTAAAGGTGCGATGACTGTTCACGAACGAGTTCACACAGGTGTCAAGCCATTTACCTGTGCAATATGTGATAAAAAATTTTCGCAAAAAAATGATATGATAAAGCACACTAAAACCCATCAAAGCAATAAATCATTGCGGTGTGAAGAGTGTGACGAAATTTTTGCAACAAAGATTGAAATTTCTGAGCACCTTGAGACCGTTCATAAATCAAATACTACGACAATTGGTTCTTCTATTATCGAATCAGACTTGAGATTATCCGAGAATTTAGAAACATATTCATTGGACATATCTTGCCCAAATATAGAACAGTCTAATGAATTAAATTAA
- Protein Sequence
- MKIVCAATSCKFSSETEDSSNIIFISFPNDDTSTAWAHNCGRPDLMIKSNEELHGNYYICSNHIEERFFLSKTNEIIIAQGTVPSLFGINSESSEHFHSLKEQYSSNHVIDSLQLDNCINAVDNSCPSNYVDTASSEYQSTIYNSDLHHEDNHIDGISRHEETEVEDNNLNFCNININIDQLEGMTIRFTNLCRICGQSTSNGMDIFIGKGSELKVKDKIHLHLPILVENDDPMPQLMCSDCYEKLEVFHSLVVTCLQTDIRLRKYLNIPSKYNHEDKFRDLISLHELEINEELGVDVVSSVEEIPIIEDKSKNVTSVNGFNVGVNKNSVSHEMQDSQSTIQCSDNNLTSTKLDSGLKFVFHSDLNNLLLQPLQSLTNPSISSNSSTMSIADDTDLVESKENEHLDCLDNNNRFQSQCDDDRPLPVTENNTQVVCAVTEGIFEQDKSLQDHRHLYEEPLPKLNNVKSEETFDEQEDLGLHKQFHSKTKTPEKKRRCGHCSFALSSRKELQTHITENHTGQQMLFKCGSCDKIYERWSSLDVHEATHRQDKPYLCDLCGKSFKHSNNLRGHKRIHLDISKKKRHVCEVCGNAFRSRFHLGEHMNQHDGNKPYICEQCGKAFSKRIQLRQHRLSHGINKYACPICGVTFNRRGNMNTHLKRHSNHDGMYTCSVCEYKCKSMSELKMHRKQHSEDDILESIKKKCNDETLWQCKVCSRIFAKRAALLSHERIHDSDQVRVECDKCGKKLASKGSLKYHTKSVHTSERPHMCQYCGDAFVTKEARLIHERIHTGERPYVCKLCNMQYRCSSNLSQHMKVHSEIRPYACQYCHKAFTRKGAMTVHERVHTGVKPFTCAICDKKFSQKNDMIKHTKTHQSNKSLRCEECDEIFATKIEISEHLETVHKSNTTTIGSSIIESDLRLSENLETYSLDISCPNIEQSNELN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00687238;
- 90% Identity
- iTF_00687238;
- 80% Identity
- iTF_00687238;