Eame002834.1
Basic Information
- Insect
- Eumacrocentrus americanus
- Gene Symbol
- -
- Assembly
- GCA_018902335.1
- Location
- JABSMT010018835.1:21192-23841[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.03 2.8 8.6 6.2 1 23 10 32 10 32 0.97 2 14 0.069 6.3 7.5 0.5 2 23 39 63 38 64 0.88 3 14 1.3e-05 0.0012 19.2 0.8 1 23 70 93 70 93 0.98 4 14 2.8e-06 0.00026 21.3 0.6 2 23 100 121 99 121 0.97 5 14 8.4e-05 0.0077 16.7 3.8 3 23 129 149 127 149 0.96 6 14 3.2e-06 0.0003 21.1 0.3 1 23 155 177 155 177 0.98 7 14 0.0021 0.19 12.3 1.4 1 23 208 230 208 230 0.96 8 14 0.0032 0.29 11.7 1.5 1 19 237 255 237 256 0.98 9 14 3.5e-06 0.00033 21.0 1.1 1 23 607 629 607 629 0.97 10 14 2.1e-05 0.0019 18.6 0.4 1 23 636 659 636 659 0.96 11 14 2.7e-05 0.0025 18.2 0.3 1 23 667 690 667 690 0.97 12 14 2.9e-06 0.00027 21.3 4.5 3 23 698 718 696 718 0.96 13 14 0.0019 0.17 12.4 4.2 1 23 724 746 724 746 0.97 14 14 2.6e-06 0.00024 21.4 1.5 1 23 752 774 752 774 0.98
Sequence Information
- Coding Sequence
- ATGAACAATGACAGCAATTTAAATGATTTCATTTGCTGTGTGTGTGGACATCATTTTAAAAATGAGTATCAATACTTTGGCCACTTGCAAATTCACAGTGGAGAAGTAATTTGGAAATGCTCCCAATGCGAAAATCCTGATGTCTCATTCGAGTCTCAATCGAAATTACAAGCTCATGAAAATCTGCATCATAATTTAGTTAAACCCTTTAAATGCACGAAATGTGACCTCGTCTTTGACAGAGCATCACAGCTTGACTATCACACAAGAAGTGTACACTTGTGTGAAAAATCTCAGGTGTGTCAAATCTGTGGAAAAGGGTTCTTTAGAAAAACAGACCTAAAAACGCATTTAAATGTTCATCTTGGTACGAATCAATCCATTTGCGAGATTTGTGGACGCAAATTTAATCACGTGTCAAATTTAATTAGACACTGCAGAACTCATGCAGGATTGAAGCCCTATCCGTGTTCAATTTGTGGCAAGAGATTTAATCAAGTCAATTCTCTTGCCAGACACAAAAATATTCATGAGAGAGCTATCGAAGGTGCCGCGGCAGATCATGGACAAGAAAGTGCAGAAAATGGAAGTGTTGATCAACGAAAAATAATAAAACGTCGACATTACTGTAAAATATGTGGAGAAAGCTTCCAATTTATCGTTCTTTTGAGACAGCACGAAAAACTTCACGAAAAAAAGACGGACGCATATTATTGTCGCAATTGTCACCAGATTTTCAAATCCCAGGAAATGCTACAGCAACATTGCTGTGAATTAGATGTAACAATCCAACAATGTGAGAAAGATTTCAAGAGTAACGACACAATTGTCTATGTCGCTTCAGACCAACCAAATGTTAATGTTTCTTTGGAATCACTGGAAACAATAAACCCTACATTGCGTGAATTAACACGAAAAGTTAATATTATTGGAATCGAGACGGATCGTGATGAGAGTATTAACATTTCTGATATATTGAGTCCTTATAATTGCGATGAAATCGAACTTACAAACTCCGATTCCATACAAAGACACGACAGTAACGAAATACCTAAAAAATTTATGAATTCAGAAGCATTATTGGCTAAGGAATCACATAATAAATGCTTGCACATTGAAGGCAGTCAATTCTTAATAGAAGTTTCTGAGTCTGATTACTTAAAAACGTTGGGATTACACGCTCTGGAAATTGAAGAGAATCGGAATATTGCCTTGCTACAGGAGAACATCAATACTGTCGAGAGGATAGACACATTTCCAACAACAGTTAAAAATACAAATGAAGAGCATCCGAAACCACATCATCCTGTGCCGGGAAGTAATGAATCAGCAGAGCTTTGTGTCGTTGAAAAGAATCTTAGCGAACAGTGGGATCTCCAGTCGTCGCAGATCCAAAGCAATTTAATTGATTTTACTAATGAAACAGTGAATGAACGTGATGGATTGTCTGTTCACTTAGGATTTGAACAATCGAAGAATTTGCACATGACGTTGATGGAGGATTTCCATTCACATTTAATTGGCCAATATTCTGAAACATTCGGGGATTATTCAGAGGTTCCAGGAAATAATCATGACAATATTCAAGCTCCTATGGTTCGATTAGTTCAAAATGAGGAAGGGGAACAATTTTTCGAACTTATTAGAGAACATTTGGACTTCGATACAAATAAAGACTTTGAGGATATTCACGATCAAGATTTCGTTAAGAAAGATTGCAGTGATCTGAAAAAGGTTGATGGATCAGAATTACAAGATAATAAAAAGCTTAAAGCATCTCGAGGAAAATCATCACGTTTTAAGGAATGCAAGGAGAAATTTCAATGTACTGTATGCAAGAAACTATTTTCGACAGCTAAAAATTTAAAGCAGCATATTGGAATGCACTTTTCAAACCAGCAAAAGTTTCAATGTAAAGAATGTGGTACATCGTTTGCGTGGAGATCTACATTAAATAAACATATTGCTAGCAACCACAGGCCTGACGGACCATTGAAATTTGTTTGTAAAATTTGCCCGAAAGTTTACAACACCTTGTCTCAAGTAAATGAACACGTGAAACGAGATCATCTAAAGGAACGAAAGCACCTATGTTCAGAATGTGGAAAATCATTTTTCAAGAAGTTTGACTTGAAGTCCCACATGCGAACTCATACAAATGAGAGACCTTACATTTGCCGGGCTTGTGGAAAAGGCTTCCATCATCAGAGCCACATTATTCGACACGAGCGCATTCATTCCGGCGAGCGACCGTATTCGTGCAATTTTTGTGACAGGGCTTTTACCCAGCCACGGTCTCTGAAGGCTCACAAACAGAGACATCAAAATGTAACAAAAGTGGATATATTAGATTATCATATAGATGAAGACGATCCAATCGCACTGAGTACCGCGTAA
- Protein Sequence
- MNNDSNLNDFICCVCGHHFKNEYQYFGHLQIHSGEVIWKCSQCENPDVSFESQSKLQAHENLHHNLVKPFKCTKCDLVFDRASQLDYHTRSVHLCEKSQVCQICGKGFFRKTDLKTHLNVHLGTNQSICEICGRKFNHVSNLIRHCRTHAGLKPYPCSICGKRFNQVNSLARHKNIHERAIEGAAADHGQESAENGSVDQRKIIKRRHYCKICGESFQFIVLLRQHEKLHEKKTDAYYCRNCHQIFKSQEMLQQHCCELDVTIQQCEKDFKSNDTIVYVASDQPNVNVSLESLETINPTLRELTRKVNIIGIETDRDESINISDILSPYNCDEIELTNSDSIQRHDSNEIPKKFMNSEALLAKESHNKCLHIEGSQFLIEVSESDYLKTLGLHALEIEENRNIALLQENINTVERIDTFPTTVKNTNEEHPKPHHPVPGSNESAELCVVEKNLSEQWDLQSSQIQSNLIDFTNETVNERDGLSVHLGFEQSKNLHMTLMEDFHSHLIGQYSETFGDYSEVPGNNHDNIQAPMVRLVQNEEGEQFFELIREHLDFDTNKDFEDIHDQDFVKKDCSDLKKVDGSELQDNKKLKASRGKSSRFKECKEKFQCTVCKKLFSTAKNLKQHIGMHFSNQQKFQCKECGTSFAWRSTLNKHIASNHRPDGPLKFVCKICPKVYNTLSQVNEHVKRDHLKERKHLCSECGKSFFKKFDLKSHMRTHTNERPYICRACGKGFHHQSHIIRHERIHSGERPYSCNFCDRAFTQPRSLKAHKQRHQNVTKVDILDYHIDEDDPIALSTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -