Eame001551.1
Basic Information
- Insect
- Eumacrocentrus americanus
- Gene Symbol
- Snai1
- Assembly
- GCA_018902335.1
- Location
- JABSMT010054052.1:1-2752[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.8 8.1e+02 0.9 0.2 3 15 65 77 63 80 0.73 2 13 0.00093 0.086 13.4 0.1 1 23 260 282 260 282 0.94 3 13 1.3e-05 0.0012 19.2 1.2 1 23 290 312 290 312 0.98 4 13 3.2e-05 0.003 18.0 0.3 2 23 320 341 319 341 0.96 5 13 5.8e-06 0.00053 20.3 0.7 1 23 347 369 347 369 0.98 6 13 0.00025 0.023 15.2 4.8 1 23 376 398 376 398 0.98 7 13 2.9e-05 0.0027 18.1 0.0 1 23 404 426 404 426 0.96 8 13 1.1e-05 0.00097 19.5 0.2 1 23 432 454 432 454 0.98 9 13 5.4e-07 5e-05 23.6 1.2 1 23 460 483 460 483 0.96 10 13 2.8e-06 0.00026 21.3 0.5 1 23 489 512 489 512 0.96 11 13 4.4e-06 0.0004 20.7 2.8 1 23 518 540 518 540 0.99 12 13 7e-05 0.0065 16.9 0.4 1 23 546 568 546 568 0.94 13 13 0.0016 0.15 12.6 0.0 1 21 574 594 574 598 0.92
Sequence Information
- Coding Sequence
- TCGGCAAAGATGACAACAGATCTTGGACAGAATTGTTTCATCTGTAGCAGCAAAGTTGGAGTTTCAACCAGAAATAGTATACAGATATTTGACGAAACGTCTCACAGTGAATTGGATAAACCTCTTGTGGATATTATACGTTCTGTTTTAGAAATAGAAATAAATCAACATAATGTTCATTCACTCGTAATATGCAAGAAATGCTACAAATTATTTAATGAGTTTGGTGAGCTGGAAAGCAAGATGACTAAAATACGCCAGGAAATTCTTGATAATTACAAGAAAACTGTTGAAAAATTAACTCATCTTCAAATCGAACACGAATGTAATGACCATGATTACATTGATACTGTAGAAAATCAGTATGTAGATAATTCCTCACCGAGGAAAAACAACAATGAAGACATGGAGCATTCTCCATTTGTGCATGCTAAAGAAGAACCAATTGAAGAACATTTGGAGGAGTATTTTCAGGATGAAATACATCAAGAAGAAGCTGAGCATTCGGACATAGGTGAAGAGTATATTGACGACCCAATTGTCGAGAAAATCGATAATGTCCCAGATGAAACGACGGTCAAAGTTGAAGAAAAGAAAAAGAAGAAGAAGGATTCAAAATCATCAAGAATGAATGCTAAAGAAGAAATTTATGAACCTATTGTATCTAGAAATGGCGCATCATACATTTGTCTTTTATGTCCTGGTGAGGAAGAGCCGGTATCTGGCGACGCCAAAGAGATAATAGCACATATGAAAGCAGTCCATGAAGCACGTTTATACATATGTGATATATGTGGAGTGGATTTTCGAAAAAGGAATGAACTCTCATTACATCTCGATGATCACGTGGCTAAGGAGGAGGGCGATTTTCAATGTGAGATATGTAACAGAATATTTAGTAATTTACGACTCTTTAGAATTCACAAGAGGATACATTATCCACAGGCAAAATCTTGGCCGTGTGAGAAATGTGGCAAACGATACAGCTCGAAAAATTTACTTGATGAACACGTTAATACTCACACTGGTCGTCGTCCTTATATTTGTGAGACTTGTGGCAAGGACTTCGCCTCAAAATATACGTACAAGGCACATGCCAAAACACATGAAATTCGTGAAAGGCCATTCCACTGTAATCAGTGTAACAAAACATTCTTGAGTCAACAGAATCTTAATCAGCACGAGCGAACTCATCTTGGTATTAAGGAGTATGTTTGTCTTGAGTGTGGCAAAGCATTTGGTTCACCAAATAATCTTGAAGTTCACAATATTGTGCATACAGGATATAAACCCTACATATGTCGGATGTGTGGGAAAGCTTTTGCTCGGAAAGCAGAGATCAGAGACCATGAGAGAACGCATACTGGTGAAAAGCCATATCAGTGTGAATTCTGCGGAGCTACTTTTAGCCAGCGATCGAATCTACAGTCCCACAAGCGTGCAACCCACTACAATGACAAACGATATAAATGCGATGATTGTGGCAAGGGATTCAAAAGACGGCGACTCTTGGATTATCACATCAAAGCAGCACACACAGGTGAACGACCGTACAAGTGTGAAACGTGTACAGCGACATTTGTTTATCCAGAACATTTTAAAAAGCACATGCGTATTCATACCGGTGAAAAGCCATACTTGTGCGAAGTTTGCGGAAAAGCATTCAACAGTCGAGATAATCGAAATGCTCATAGATTCATTCATAGCGATAAGAAGCCGTATGAGTGTTTAGTTTGTGGCATGGGATTTATGCGAAAGCCATTATTGTATGCGCATATGGAAGCACAGGGCCATTTGAATGACACCATTGTCGTTAATCAACCGAGATTGACGACGGAGGAAGAACAAGTCATAGCCCTCCCAGATGGCGATGTTCAATTGTTAATGGAAGATGGAAATACAGATCAGTTGGCCGAAACTGAATTATACGTAACAGAATTGAAGAATCATGTGATAATTCAACAAGGTGATGGGCATATCTATCAAGAAGAAAACGTTCTGGATATTTCTCCTCAAGCAGATATTGTACATGATCATGTTGAGCACATGGTGGTGAACAGTCAGATGACGTTTTCGGAGGGCGAAATCGTAGAGTGTAAAGCTGACAATGAACAGGAAGAAGAAATGTATAGTTACAATGATAGCGAGGAAAGTGAAACAATCGTTGTACCAGCAACAGCGGATTATAAAGATATCATAGGCGATAACAAAAATCAGGTTCGACTGGTTCAAATAAGAATTCCGTCTGGAGCTGGAGCTGATGGGAAAGGCTGGCTGAGCCTTGTACAGCAACATACTTAA
- Protein Sequence
- SAKMTTDLGQNCFICSSKVGVSTRNSIQIFDETSHSELDKPLVDIIRSVLEIEINQHNVHSLVICKKCYKLFNEFGELESKMTKIRQEILDNYKKTVEKLTHLQIEHECNDHDYIDTVENQYVDNSSPRKNNNEDMEHSPFVHAKEEPIEEHLEEYFQDEIHQEEAEHSDIGEEYIDDPIVEKIDNVPDETTVKVEEKKKKKKDSKSSRMNAKEEIYEPIVSRNGASYICLLCPGEEEPVSGDAKEIIAHMKAVHEARLYICDICGVDFRKRNELSLHLDDHVAKEEGDFQCEICNRIFSNLRLFRIHKRIHYPQAKSWPCEKCGKRYSSKNLLDEHVNTHTGRRPYICETCGKDFASKYTYKAHAKTHEIRERPFHCNQCNKTFLSQQNLNQHERTHLGIKEYVCLECGKAFGSPNNLEVHNIVHTGYKPYICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMEAQGHLNDTIVVNQPRLTTEEEQVIALPDGDVQLLMEDGNTDQLAETELYVTELKNHVIIQQGDGHIYQEENVLDISPQADIVHDHVEHMVVNSQMTFSEGEIVECKADNEQEEEMYSYNDSEESETIVVPATADYKDIIGDNKNQVRLVQIRIPSGAGADGKGWLSLVQQHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -