Eame000321.1
Basic Information
- Insect
- Eumacrocentrus americanus
- Gene Symbol
- -
- Assembly
- GCA_018902335.1
- Location
- JABSMT010017616.1:12258-16264[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.04 3.6 8.3 2.6 1 23 369 391 369 391 0.97 2 19 0.044 4.1 8.1 0.5 2 23 427 448 426 448 0.94 3 19 0.00047 0.044 14.3 1.3 1 23 514 537 514 537 0.91 4 19 0.0034 0.31 11.6 1.3 2 23 541 562 541 562 0.98 5 19 0.0014 0.13 12.9 1.4 2 23 614 635 613 635 0.97 6 19 5.2e-05 0.0048 17.3 5.5 1 23 640 662 640 662 0.97 7 19 0.00053 0.049 14.2 0.8 1 21 668 688 668 692 0.92 8 19 0.0017 0.16 12.6 1.4 2 23 769 790 768 790 0.95 9 19 0.00018 0.016 15.7 5.0 1 23 845 867 845 867 0.97 10 19 0.00025 0.023 15.2 0.7 1 20 872 891 872 893 0.94 11 19 0.043 3.9 8.2 0.6 2 23 904 925 904 925 0.97 12 19 1e-05 0.00092 19.6 0.3 2 23 964 985 963 985 0.97 13 19 2.3e-05 0.0021 18.4 1.6 1 23 990 1012 990 1012 0.95 14 19 0.00014 0.013 16.0 1.2 1 23 1018 1040 1018 1040 0.98 15 19 1.5e-05 0.0014 19.1 0.3 3 23 1059 1079 1058 1079 0.98 16 19 1.3e-06 0.00012 22.4 0.3 1 23 1085 1107 1085 1107 0.99 17 19 0.00011 0.0097 16.4 0.2 1 23 1113 1135 1113 1135 0.98 18 19 0.00034 0.031 14.8 5.7 1 23 1141 1163 1141 1163 0.96 19 19 0.0095 0.88 10.2 0.4 1 20 1169 1188 1169 1190 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTTGATATTGACACGGCTGAGCCGCAACAAAATGAAGAGGACCCTGTGGATCCAGCGGTGCACGTATGTCGTGTCTGTCTGCTTGATAATGTCATCATGAGGGACCTCTTCGTCGAGGGAAACCTCGTCTCGTTGTCCACCAAGGCCATGAGCTTCGCCAGCGTGAAGATGCTTCCGGGCGATGGTTTACCAGCTCAAGTGTGCTGTGAATGCGCAGACAAGCTTGAGTCGGCTTATGAATTTAAACTGCAGGTCGAGCAGGCAGACAGTGTGCTCAGAGAGAGATACGACAGTTTAAATATAAAGGAGGAGCTGTTTTTCAATGAAGTCGAGGTTCATCTGGAGGGAGATAGGGCTGAAGGAGATGTGTCTGAGATTGATGTTGATGCTCAATATGAGGCTGCTGAGACGCTTGATAGAGATGTCGATAGTGAGAAAGCTAGTACACTTCTGAAGGATCATTTGGCATTGCTGCAAGTTGAGAAGCTTGCCGAGCACGAGCAGCATGTTTTGGAGCACAGTCATATGGTTCAGGATAATCATGATATGCAGGAGCAGGCCATGTTGAAGGAGCACATGTTGCACGCAGAGGAACAGTACATTCAGGAGAGTGAACACAATGACGAACAGATGTTGACTGAGGAAATGGAGTCCGGGGGGTGTGTTGAAGATGATATAAAAGCTGAGACATTGCAGGAGCAGGATGGTATCACGATAGAGGAGCATAATTACATGGTGCAGCAGGGCTACACTTTGTCGAGCGAGCAGGAGCAAGAGTTATTGAGTCAGGAGAATGTTGCAAATGATCACGACACTGCAGAGTATTTATCTATGATTGACGATCAAGAAATGGAAGTCAAGGAGAATGATGATTGCGAGGAGGGTGCTCTTGAATGTAAGAAATCAGAGGAATGCATGGCTGATGAAGATTGTGAGCAGGAGGAAGAGGACCACGAGACTCAAAAGATTAATCGTACATCTTCGAGACTGAATTCAGCATCAGGACAAACTTCGGACGAGGAGAATTACTTTGAGAATCTCAATTTAAGTAGTCGACTCACACAATATCAAATCGATAAATCCGACAAGGTTTTCTTCATGTGTTATCTCTGTGACAAGCAATTCCTCTCGAAGGAAGTGCTGAAGGAGCACATGCACTCCCACGAGGAAGTCAGAAGGACATTGTGTCTCAAAAAGAGTCCAGAAAAATCACAGAAAGCTGCTACACCTGCGTCCAAAGGACAACCACCATCAGGCAAAAAACCCAATAAATGTCCTTACTGCGGAAAAGAATATCTCTACGTGATTTCTTTCAATAAACACGTGAAGCAGCATCAGAAGAACGACGACGAGCTGAAAGAAGTCGTGGATCCTTCACTCCAGGCCGAGGATTCTTTAGACTCTGATGGTTTTGATAACAGCGACACATTCGAAGTAATTGCCACTCATAAAGAAGAACCTGAAATGGAGGACAAAGCCGAGGGAATTGAAGATGCAACTCCAAGCAGGAAACGTCGTCGAATTGAATCTTATTCATGCGACAAATGTCCAGAGCGATTTTCCTACAAACTGGACCTCAGAAGACACTCCTCTCTTCAGCATAATGTACGGAAATGCAGCATCTGTGAGCAGGAATTCGATTCGATGGAGAAGCTACGCAATCATCGTACGACACACGTGATCGAGGGCGTTATAACCGAGCAAGATCTCAAGGATGAGCTTGCAAATATATGTAACAAAGAGTACAAAGAGGAGAATGAACAGATGGAGACAGCTCAGCAGGATGAAATAGCTCAACAAGACACACTGAACGAAGTCACGAACGAACTCAAATGTCAAAGTTGTTCTCTGATATTCAACAGTAAAAAATCCCTTTTGAAACATCTAGAGACTCACGAGGGCGTCAGGTATAGATGCAAAATCTGTAGCCAAGAATTCACACACAAGGATCACCTTCGAAAGCACGTAGAGCAGCATGCCCAAGGAAAGACCTTCAAGTGTACACAGTGTAACAAAACATTCGGTAACGAATTGACTCTGAGGAACCATCTAATAGCCACAAACCATAAAACGATAGTACGCGGCGAAGAGTACGATCCAAATAAGAGAATAAAGAGAGTCGCAGCTAAAGCAGCTCAAAAGATCATAGACAAAATCAGCACGGAGGATGGTCTAGAAGACTCGGAGAGAGACGACGACAATGACGAATTTATTGCCGACGATTCTGCAGGAATGGGAAAGTCTGGAGACAGACTTCAGGGAACCTCAAAGAAATTCGGCAACAAGAAAGACCTCGAGTGTGGAGTATGTAGTAAGAAATGTATCTCAAGGCAAGCTCTAACAAAGCACATGGACTATCACATGAACAGCAACAAAGCAGAGCAGTCAGATCGAGGGAAGAAGAGCGCGGAGATGAAGGATAGCTCGAGAAACTGTGGAATGGGCTTTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGGACTGGCCAATGGACAATCACGAGTGTACAACGTGCAAGAAGAGATACAGCACGAAGAAGTCATTGCTTCGCCATCAACTGTTGCACGAGGAGCCAAACTTTGAGTGTGACATCTGCAATGTTAAATTCTACAGAAAGGACAAGCTAAAAGCCCACTACGACAAATGCTCTGAGAAGAATCCGAATCAAGTAAGGAAGTGTAACATATGTGGAGACACCTTCGAGAACAATGAAATCTTGCGTGAGCACAGATCGAAGCATGTGGACGAGGGAATCCTCACAGAAGAGGATCTACGAGAATTGGAGCCAGGCTCTGAGGAACGAAGACAGGGCGAGAAGATCGCACGAAAGAGAAGAACAGACATTGTCGGATTGGAATGTCCAGAGTGCAATAAACAGTACACCTCTAGAAAGGGTCTATTGAGACACATTCAGGTGCACGAGGGCAAGAAATACCTCTGCGACATTTGTCCAAAGAAATTCTATCGTCGAGAGCACCTCAAGATCCACGTGGCGAAGCACAACATGATCAAGCCTTACAAATGCACTCGTTGCTCCAAACGTTTCATCAAGGAAGAACAGCTTGCCGCACACTTGACAAAACACGAAAAGACATTCAAGAAAAATAAAGAGCCCGACAGCAGTGCAAAGAGATGGCTCTGTGAGATCTGCTCGAAGAGCTTCACACAGTCCACGACTTTGGTGGCACATTTGAGAGCTCACAAAGGAATTAAGCCGTATGTCTGCGAAGTTTGTGCCAGGCCTTTCACCACCAATGCATACTTGAAGATGCATATGAGAACACACACGCATGAACGACCATACAGCTGCCAATACTGCGCCAGAGCCTTTGCTCGAGCTGATACCCTGGCGAATCACTTGACTTCACACACTGGCGAAGCCAAGTATCACTGCAAACATTGTCCAAAGAACTTCAGACGTCTCAAGTCGTTGAAAGAGCACGTCTACATTCACACTGGACAGAGGCCCTATGCATGCCCAACCTGCGATCGAAGATTCAACAACAATGGAAGTCGATATGCCCACAGCAAGAGATGCAAGCAGAATATGCTGCTGAACCAGACGAGGCAGAATCAGAATCAAACGACGACCATTGTCGAGCCACAGAATCCTGCTCAGCAGACAATTAGGCTTGCACAGACTGTTGGGCCTACGATGCAGGTCATTCAATCGAAGAACATCAAGACGATCACGATAACCAGACAACCGGATCAAGTTGGTGCACATCAGATGATGCAGCATCAGGAGATACTCATGCCACTCATTTTGCCTCTCACAGTTACCCTAACTGATGTCGATGACGAAGTGATATTGCCAGAAGGCACAAAAATATTCACCACAACGTAG
- Protein Sequence
- MDAVDIDTAEPQQNEEDPVDPAVHVCRVCLLDNVIMRDLFVEGNLVSLSTKAMSFASVKMLPGDGLPAQVCCECADKLESAYEFKLQVEQADSVLRERYDSLNIKEELFFNEVEVHLEGDRAEGDVSEIDVDAQYEAAETLDRDVDSEKASTLLKDHLALLQVEKLAEHEQHVLEHSHMVQDNHDMQEQAMLKEHMLHAEEQYIQESEHNDEQMLTEEMESGGCVEDDIKAETLQEQDGITIEEHNYMVQQGYTLSSEQEQELLSQENVANDHDTAEYLSMIDDQEMEVKENDDCEEGALECKKSEECMADEDCEQEEEDHETQKINRTSSRLNSASGQTSDEENYFENLNLSSRLTQYQIDKSDKVFFMCYLCDKQFLSKEVLKEHMHSHEEVRRTLCLKKSPEKSQKAATPASKGQPPSGKKPNKCPYCGKEYLYVISFNKHVKQHQKNDDELKEVVDPSLQAEDSLDSDGFDNSDTFEVIATHKEEPEMEDKAEGIEDATPSRKRRRIESYSCDKCPERFSYKLDLRRHSSLQHNVRKCSICEQEFDSMEKLRNHRTTHVIEGVITEQDLKDELANICNKEYKEENEQMETAQQDEIAQQDTLNEVTNELKCQSCSLIFNSKKSLLKHLETHEGVRYRCKICSQEFTHKDHLRKHVEQHAQGKTFKCTQCNKTFGNELTLRNHLIATNHKTIVRGEEYDPNKRIKRVAAKAAQKIIDKISTEDGLEDSERDDDNDEFIADDSAGMGKSGDRLQGTSKKFGNKKDLECGVCSKKCISRQALTKHMDYHMNSNKAEQSDRGKKSAEMKDSSRNCGMGFGXXXXXXXXXXXXXXXXXLDWPMDNHECTTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPNQVRKCNICGDTFENNEILREHRSKHVDEGILTEEDLRELEPGSEERRQGEKIARKRRTDIVGLECPECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCSKRFIKEEQLAAHLTKHEKTFKKNKEPDSSAKRWLCEICSKSFTQSTTLVAHLRAHKGIKPYVCEVCARPFTTNAYLKMHMRTHTHERPYSCQYCARAFARADTLANHLTSHTGEAKYHCKHCPKNFRRLKSLKEHVYIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNMLLNQTRQNQNQTTTIVEPQNPAQQTIRLAQTVGPTMQVIQSKNIKTITITRQPDQVGAHQMMQHQEILMPLILPLTVTLTDVDDEVILPEGTKIFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -