Basic Information

Insect: Eumacrocentrus americanus
Gene Symbol: -
Assembly: GCA_018902335.1
Location: JABSMT010051520.1:662-2896[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0023 0.22 12.1 4.4 1 23 243 265 243 265 0.99

2 15 0.0084 0.77 10.4 0.7 1 23 271 294 271 294 0.95

3 15 1.4e-06 0.00013 22.3 1.3 2 23 366 387 365 387 0.97

4 15 1.2e-06 0.00011 22.5 1.0 1 23 393 415 393 415 0.98

5 15 0.0002 0.018 15.5 0.3 1 23 421 443 421 443 0.98

6 15 6e-07 5.5e-05 23.4 0.5 1 23 459 481 459 481 0.98

7 15 2.5e-06 0.00023 21.5 1.7 3 23 489 509 487 509 0.98

8 15 1.7e-05 0.0015 18.9 1.5 1 23 515 537 515 537 0.98

9 15 0.0014 0.13 12.9 0.2 1 23 543 565 543 565 0.99

10 15 2.4e-05 0.0022 18.4 0.2 1 23 571 594 571 594 0.92

11 15 1.4e-05 0.0013 19.2 1.3 1 23 600 622 600 622 0.98

12 15 0.0003 0.028 14.9 4.7 1 23 628 650 628 650 0.98

13 15 3e-06 0.00028 21.2 0.3 1 23 656 679 656 679 0.96

14 15 4.8e-05 0.0044 17.5 4.9 1 23 685 707 685 707 0.97

15 15 6.5e-06 0.0006 20.2 4.7 1 23 713 735 713 735 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0023	0.22	12.1	4.4	1	23	243	265	243	265	0.99
2	15	0.0084	0.77	10.4	0.7	1	23	271	294	271	294	0.95
3	15	1.4e-06	0.00013	22.3	1.3	2	23	366	387	365	387	0.97
4	15	1.2e-06	0.00011	22.5	1.0	1	23	393	415	393	415	0.98
5	15	0.0002	0.018	15.5	0.3	1	23	421	443	421	443	0.98
6	15	6e-07	5.5e-05	23.4	0.5	1	23	459	481	459	481	0.98
7	15	2.5e-06	0.00023	21.5	1.7	3	23	489	509	487	509	0.98
8	15	1.7e-05	0.0015	18.9	1.5	1	23	515	537	515	537	0.98
9	15	0.0014	0.13	12.9	0.2	1	23	543	565	543	565	0.99
10	15	2.4e-05	0.0022	18.4	0.2	1	23	571	594	571	594	0.92
11	15	1.4e-05	0.0013	19.2	1.3	1	23	600	622	600	622	0.98
12	15	0.0003	0.028	14.9	4.7	1	23	628	650	628	650	0.98
13	15	3e-06	0.00028	21.2	0.3	1	23	656	679	656	679	0.96
14	15	4.8e-05	0.0044	17.5	4.9	1	23	685	707	685	707	0.97
15	15	6.5e-06	0.0006	20.2	4.7	1	23	713	735	713	735	0.98

Sequence Information

Coding Sequence: ATGCAACAAGATGAAACAAAAAAATTTAGATTCTTCTTTGTATATGAAGAACAGTTCTCGAAATATGTTATACTACAAGCACTAGAAAATGATAGTGTTATTGAAGTTGCTGAGAAACTCATTGACATTTTTGCAATGATTGGTGCTCCTCAAATCATTCAAAGTAGTAATGGGCAGAATTATGCACAGGATTTAGTAAAAGAGATCAGAACACGTATACCAATTCTGAATATCGCTTCTGGTAGTCTTATGAAGCACAATCAGATAAATAGAGACTTCAGGAGTCTCATTACCTCATGGAAAAAGGATAATCCTACGCGTTTATGGTATGAAGGTCTGAAATATGTCCAAATTATAGAGAACATGACATTGAAGGTTCACAGCACCAAAATTCCTGCAGAGTTTATACTTGGACGGGAGATCTTGCAGGACGTTGCAAGAATAATCAAGACCGACGAAATTGTCAATGACGTGTGGCCTGAGAAAGATTTAATGACCGAGAGTAAAACAACGACAAAATATAACTGTTCAAATCTACAGGAGAATCTCAACGATGACTTTCAAGATTCGCAAAAATTGAACAATAATTTAGCCAAAAATGAAAATGGCAGTGATTTAAATTTAATCGAGATAAAAGATGAACTACCATTCAGTAGCAATGAGACTGACCAGATAAAGTCAAATATCGAACATCCTGAAGAAAAACCAAGTTCACCTAAACGTGATTTTCAATGTAAAATGTGTAATAAGCAGTATTTAAAGTTAAACCACTTGAACAATCATATGAAGATTCACAAAAAATCTAAATCATTCGAATGTACAATTTGCGCCAAATCCTTTAGGTGGATCAGTCGATATGAAAAACATATGCAGCTGAATCACAGCGAAGAAAAAACACCACCCGCTATTACAGCCTCCGAGAAAGACAAAAATCGCACAGTTACGACGGAAAAAGAGCCAGTACAACTGACAAAAGATGATTCCAAGCATAAAATAAAGTCTGAGAACGATTCTAAAAAGACTAAAAATCGCGGTCTTCCGCCACTACGGAAAAAAGGAAAGGCCTCTGTCAAGTTTAATGGTAATCCTTCGTTAGAGTGCACCTATTGCAACCAAAAATTCAATTTTCCAAGTGTTCTGCAGAGGCACATGCGTACACACACAAATGAGAGACCATACATCTGTCAAGTTTGTGGCAAAAGTTTTAAGCAGCTGGGCCACCTAAGTCAACATGCTTTGACTCACACGGACTACCGATCATTTCAGTGCTCTGTATGTGAAATCAAATTTGAGTCGCTGGATGCCTTGAAGACTCATTCATTGACTCACAAGGACAGCAATGGCACCAGTAGATGTAAAGACATTTATCGACTATTCGAGTGTGACATTTGCAAGAAAGTATTCCCGACAAAGAGTGTTTTGGAGCGCCACATCTTTACGCATACTCACGAACGGCAATTTGGTTGCAAGATCTGCGGGAATCGTTTCAAGCAAGCTAGCCACTTAAAGTCTCATATGCTGGTTCATACAGGCGAGCGTAAATTCGAGTGTTTAATATGCTCAAAGCGATTCAGCTTATCTAATTCCCTGAAAAAACACATGTACGTGCACAATGGGAACAAGCCTTTCCAGTGCGATGTCTGTGGAGCCAGATTCCTGGAGAGGAGGAATCTTAATGGACATCTTATGACCCACACAAATGAAAGACCGTTTGCCTGTAAAATTTGTGGGAAGCGTTATACTCTGGCAGACACTCTGAAACGCCATGTGAGTGCTGCTCATGAAAACGGCCGGACTTATCAGTGTGAGATATGTGCGAAAATGTTCAAGCAATTAGCCCACCTTTCCGTTCATAAGAAGGTCCACATGGACGAGCGACCCTTCCAGTGTCATCTCTGCGAGAAAAACTTCAAGCACAAGAATGTCCTCAAATCTCATCTAGCGATACATGCTAACGTTAGACCGTTCGAATGCGACGTTTGCAATGCTACTTTTGTCAGAAAAACCAATCTACAGACTCACATTACATCTGCTCATATGAACGAACGTCCACACTCTTGTAATATTTGTCATAAGCGATTCAAACAAATAAGTCATCTCAATGGTCATATAATTATCCACAGTAACTCCTTGCCATATCAGTGTGACTTTTGCGATAGGCGATGTAATAGGCTTGATAATTTGAAAAAGCATATGAAGTTGCATACGAAAAATGAGGAGCAGATATTCAAGTAA
Protein Sequence: MQQDETKKFRFFFVYEEQFSKYVILQALENDSVIEVAEKLIDIFAMIGAPQIIQSSNGQNYAQDLVKEIRTRIPILNIASGSLMKHNQINRDFRSLITSWKKDNPTRLWYEGLKYVQIIENMTLKVHSTKIPAEFILGREILQDVARIIKTDEIVNDVWPEKDLMTESKTTTKYNCSNLQENLNDDFQDSQKLNNNLAKNENGSDLNLIEIKDELPFSSNETDQIKSNIEHPEEKPSSPKRDFQCKMCNKQYLKLNHLNNHMKIHKKSKSFECTICAKSFRWISRYEKHMQLNHSEEKTPPAITASEKDKNRTVTTEKEPVQLTKDDSKHKIKSENDSKKTKNRGLPPLRKKGKASVKFNGNPSLECTYCNQKFNFPSVLQRHMRTHTNERPYICQVCGKSFKQLGHLSQHALTHTDYRSFQCSVCEIKFESLDALKTHSLTHKDSNGTSRCKDIYRLFECDICKKVFPTKSVLERHIFTHTHERQFGCKICGNRFKQASHLKSHMLVHTGERKFECLICSKRFSLSNSLKKHMYVHNGNKPFQCDVCGARFLERRNLNGHLMTHTNERPFACKICGKRYTLADTLKRHVSAAHENGRTYQCEICAKMFKQLAHLSVHKKVHMDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCNATFVRKTNLQTHITSAHMNERPHSCNICHKRFKQISHLNGHIIIHSNSLPYQCDFCDRRCNRLDNLKKHMKLHTKNEEQIFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -