Basic Information

Gene Symbol
snpc-4
Assembly
GCA_018902335.1
Location
JABSMT010052079.1:3574-6231[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 1.3e-09 1.4e-06 28.4 0.1 3 38 262 299 260 304 0.96
2 4 1.4e-11 1.5e-08 34.7 0.5 3 45 318 364 318 365 0.96
3 4 1.2e-10 1.2e-07 31.7 0.0 1 44 371 415 371 417 0.93
4 4 9.5e-09 9.9e-06 25.6 0.0 3 34 426 458 425 465 0.88

Sequence Information

Coding Sequence
ATGAGTGAACATAATGACGATAAGGATATTCTTGAAGATATCCGTACCCTGGAGAACTTATTGGAGGAAGATGATGTGTCGGACGCCAGTGATGGAGAATGTGACGACAACAAGGATGTCCCAACGTATAACCTTCATGGTGAGGAGTTATCAGAGCCCGATGTTGCACTACAGGCTCCTCCAAGACCTGAGACATCGCCCGATGTAATTGCAGATGCAGATTCAGTCTATGCTGCCAATCAACGTCTCATTGCTACTTATAAGATAGCTGAGGAGGCTATCCAAGCCAGGCTCAATGATTGTCGAAAGAAACAAGAAGCTATTTCCCATCAAATTGATCTGATTTCTCGAGGTGGTCGAGCCAACTGGCGGATTCCTTATGTGAAAGCAGGAATGGCTTATTTCAAGGACGACAAGCTCTTTCCAGCTCCCCAGAATACAGATACAGCGGCTAAAATCCAAGCGGGTGAATTCTCAGTAATTTATGCACCTCGACCTCGCTCATGGACGACGAGAGCACGAAACATTTTGGTTCGTGAAGTTCGTGAGCAGGCTAGTGAGAAGACACTCATTAAAATGAAGAGAATAGCTGAGGGAATTGAACGAGGCAACACTAATAAGCCAACCGAGGTAGTGCCAAAGAATTGGAACAAGTTTGGCTATGCAGGCCCTGCTGAATTCGACTGGATGAAGATTTCTATCCAAGATCTGAAGAGTAGATACTCGTGGAAAGCATGTTGGGCTATGTGGAATCTCCAGTTAAACGATGATATCAATCATGCTAAATGGACGAGTGAGGAAGACGAGCAGTTGCTACACATAGCAGAGAGCCATGCTTATCAGGACTGGAATTCTATTGCTGAAGATTTAGGCTCAGGACGAAGTTGTTATCAATGCTTTGTGAGGCACTGCACATTGTGCCCACCGAGTTTCACGAAAAGCATTGATATCCCATGGTCACCCTTGGAGAATGAAATCCTCATCAAGTGTGTCGAACATCTGAGAAGAGGCGACTGGATACCTTGGGGTGCAATAGCGTCTTATATCAATGATAGGACAAAAAATCAAGTCTATTCTCACTGGAAATATAATTTAGATCCAGCTTTGAAGAAGGGCAGATTCACTACAGATGAGGATCAAATGTTATTGAATGGCGTTGAGAAATTTGGTACAAACTTCCCGAGGATAGCTTCTGAATTACTGCCAGAGAGAACGAGTGTACAGTTAAACAGTCGCTTCAATTTGTTGATGTTGAAAACTAATCAATCTTACAATTCGTGGACCATTACGGAAGATCGACAATTACTTTCATTGTACGAAGAATTCGGACCGCAATGGAGTACTATTGCCAATGTCATGAAGAAGGATAGGACGTATCTTCGACATCGTTATGCAGCTCTGAGACGTTATCAGTCGAAGGGACTGAATCTCATTCATATACGACGAAAAATCATGCCAAACAGTACGACAGCGGAGGATGATGAGATGTCGGAGCTTGAGAATGATAACGCCAGCACATCAAACAATGTAGATGTGCAATTGCTGCGATATTTTCAAAACATACAAACTCCAGTCTCGAGGCCAGGTCGAAAGGCAAAGTACCACACTGCCCTTCAACTAGAGAGCAGAACTAAACAGCTCGTTAGTATCTTCAAAAAGCTCGATGCCAAGTTTGAGATTCCAGAAAATTTGAACCTTCCAGGTCTCTCCGAAAAGGACAAACAGGTACTTACATCCTTGAGAGAATACATGAATGCGGATCCTCCAAGCATATCGTCTGAAAAGATTGAACAACTTCGAAAGAGGATGTTTGAAAGTAAAATAAACACGACCGATAATGATGCTACAGGACATTTCAGTCCTTCTGCTTCATTTAGCCACGTTCGGAAACGTGGCACTAAACGACAAAAAGCTAAAATGTTAAAAGCTAATGCTAATTGTAAAGATATTGGTATAGATTTACCCACAAATGTTGAAACTTCTACTCATGATTTTAACTTGAATTTAAGAATGGAGCTTGACACCCCTATGAATATATTAGAAACTATGAACGAAGAAGAAAAGACGACCTTTGGCAAATTAACGTCTTTAGTCACACGAATGACAAAGGATTTTCAATCCCCTGGAAAGTTTGAAGAAAAATATTTGACTTCAGTAAATTCAGCAGCAAGAACAGCGAAATCATCGTGGGAAAGCAATATTGAAATAAATAGTCCTTCGATTAGTACACATGAAAATATCTTCATTGATCCCTGCCATTCAATCTTCATTGATCCATGCTACTCAACTCTGCTTGGATATAAATGCTTATTAGATATGAAAAAAACGTACAGCAGATTTAGATCAGCCAATGGTTCAGAAGAAAGTACGCCAGATAATTTGAGAGTTACGAAAAGTGGGAAACAAGCATTTTATTTATTGAAAACTCGATTAATTCGCTTGTTCAAGTATCCCATTGGGTTGGCTCAAATATCTGACGATAAATTTCCTCAAGATCCTCTTGCATCATTTGATTCCGATTGTGACATTCACAGTGACAAATCAGACGAAGATGACGAAGAGTCAGTATCCACAATAATGGAGCTAGATTTTCACGAAGTCAAGCCAGAGAGAGTTAACAATAAAATTAGCGAACCTGTTCTTTCAGACCTTGATTGA
Protein Sequence
MSEHNDDKDILEDIRTLENLLEEDDVSDASDGECDDNKDVPTYNLHGEELSEPDVALQAPPRPETSPDVIADADSVYAANQRLIATYKIAEEAIQARLNDCRKKQEAISHQIDLISRGGRANWRIPYVKAGMAYFKDDKLFPAPQNTDTAAKIQAGEFSVIYAPRPRSWTTRARNILVREVREQASEKTLIKMKRIAEGIERGNTNKPTEVVPKNWNKFGYAGPAEFDWMKISIQDLKSRYSWKACWAMWNLQLNDDINHAKWTSEEDEQLLHIAESHAYQDWNSIAEDLGSGRSCYQCFVRHCTLCPPSFTKSIDIPWSPLENEILIKCVEHLRRGDWIPWGAIASYINDRTKNQVYSHWKYNLDPALKKGRFTTDEDQMLLNGVEKFGTNFPRIASELLPERTSVQLNSRFNLLMLKTNQSYNSWTITEDRQLLSLYEEFGPQWSTIANVMKKDRTYLRHRYAALRRYQSKGLNLIHIRRKIMPNSTTAEDDEMSELENDNASTSNNVDVQLLRYFQNIQTPVSRPGRKAKYHTALQLESRTKQLVSIFKKLDAKFEIPENLNLPGLSEKDKQVLTSLREYMNADPPSISSEKIEQLRKRMFESKINTTDNDATGHFSPSASFSHVRKRGTKRQKAKMLKANANCKDIGIDLPTNVETSTHDFNLNLRMELDTPMNILETMNEEEKTTFGKLTSLVTRMTKDFQSPGKFEEKYLTSVNSAARTAKSSWESNIEINSPSISTHENIFIDPCHSIFIDPCYSTLLGYKCLLDMKKTYSRFRSANGSEESTPDNLRVTKSGKQAFYLLKTRLIRLFKYPIGLAQISDDKFPQDPLASFDSDCDIHSDKSDEDDEESVSTIMELDFHEVKPERVNNKISEPVLSDLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-