Eame013900.1
Basic Information
- Insect
- Eumacrocentrus americanus
- Gene Symbol
- -
- Assembly
- GCA_018902335.1
- Location
- JABSMT010026666.1:1-902[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7 1.1e+03 -0.5 0.0 28 34 1 7 1 12 0.84 2 2 4.5e-12 2.8e-09 36.6 0.1 5 41 39 75 38 78 0.93
Sequence Information
- Coding Sequence
- ATACCCAAGACAACTTTATTTCGTGATAAAGTAAGACTGGTGGATGAAGGAAAGTTGCCCGAATCCTTTTGGAAGAAACGAAGCGTTGAGAATGGAACATCGAAGAAATTACGTCTTGAGGAGGCTGTTACAGCTTGCAAAGAAGGCAAAATGTCTCAAGCAGCTGCATCTCTGGCTTATCACATCCCTAAGACAACGATATGGCGACGACTTCGACAGGATAATCAAAGAGCAGGAATTCGAATGGATAATACAACAAAAAGACAGACGCCAACAGTTCAATCTAATGCTGCTGACAAAATTAAATGCGAAGAAAATGCTGAATTTGAACTTTGTCAGGTTCCATCCGAAATTCCGATAACTTACATCAATGAAAATAGTATTCCAGCAGACTCAGTGATAATCCTAACGACAGAGGATGTTGAAGAACTCGATTTAGAAGAAGGTCGACAAATAATGGTTAATTCAGATTCTCGCGAGGCTTATGTTCCTTGTACAATAAGTAGCGAAAGGAAAATCAATTATACACGATCTGGGAGATTAGATGTGTCAAAC
- Protein Sequence
- IPKTTLFRDKVRLVDEGKLPESFWKKRSVENGTSKKLRLEEAVTACKEGKMSQAAASLAYHIPKTTIWRRLRQDNQRAGIRMDNTTKRQTPTVQSNAADKIKCEENAEFELCQVPSEIPITYINENSIPADSVIILTTEDVEELDLEEGRQIMVNSDSREAYVPCTISSERKINYTRSGRLDVSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -