Etes003661.1
Basic Information
- Insect
- Eulithis testata
- Gene Symbol
- -
- Assembly
- GCA_947507515.1
- Location
- OX382216.1:1306217-1312760[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.6 99 3.9 3.4 1 21 205 225 205 228 0.95 2 10 0.021 1.3 9.8 0.7 1 23 235 257 235 257 0.97 3 10 5.9 3.6e+02 2.2 0.1 1 19 261 279 261 282 0.77 4 10 0.0033 0.2 12.4 0.1 2 23 290 312 289 312 0.95 5 10 3.3e-05 0.002 18.7 4.6 2 23 317 339 317 339 0.94 6 10 0.0029 0.18 12.5 0.6 2 21 373 392 373 397 0.93 7 10 8.6e-05 0.0053 17.4 0.4 1 23 405 428 405 428 0.93 8 10 0.00016 0.0095 16.5 1.5 2 23 435 457 434 457 0.92 9 10 2.1e-06 0.00013 22.4 0.3 3 23 468 488 467 488 0.98 10 10 5.8e-06 0.00036 21.0 0.2 1 23 494 517 494 517 0.96
Sequence Information
- Coding Sequence
- ATGACAAATGTAGACTCTGTGTGCTGGGAGTGCATCAACTTATTCCACAAAGTATACAAATTCAAACAGAGAGTTGTAAAAGCACAGGAATGCCTGATAGACACTATGAAGTTGAAACCCCTCGCACCCCTCAGCCAGCTTACACAGTCACCTATGAAAGTCAACGATGTCTGTTGCAATGTAACCATCGGAAAAATAAATCAAGACGTCAAACTGAAAAAATACATTAAAGTAGAAATTGAAAGCATAAAATCAGAATCTATAGATGATACTAATGATGATAATGAATATAAAAACTACGAAGTCGACATAAGTGGTATTAAAACTGACGTAAAAAAAGCATGTTATGATACAGATGAAGATCATTCAGATATTAAGAATGAGAAGTATCATGATGAGATGAAGGATGAAACTAAAGATACAAAAACAACTAAACTTAAAAGAAAAGCAAGAGTCAAAGTGGAGAAGAATCTTAAAAGAGTGAAGAGTAAGGATATAAAAAAAATGATTTCAAAAAAGAATTACATGATAATTGATAACATGTCAGAAGAAGAAATGCTGGCTAAGAGAGAAGCAGACAGACAGACAGATAGATACAAGAACAAAGTTAAATATAGATGTGAGTTGTGTATACTTGGGTTTTTCGACAAAAATCTTTATGAAAAACATATGAAATGCAAACATTCCGAGGAAGCCGGCATTCACCAGTGTCCAATCTGTGAGGTTAGATTCATAAAGATTAACTTCTTCGAAGAGCATGTACAAAGTCACTATCAAAAGTACAAATGCCGAATATGTCCGTTCATTGGCTACAAGTTATCGGACATGGTGTCTCATGACGCTAAAGAGCATGATGTCAGAAGATTAGTTTGCACAGTGTGTGGTGAAGGGTTTTTATCTCCGTCAACTTTAAGGTTACACCGAGAAATGACCCACCAAGCTCCTCCTAAGTGTGAATTTTGTGATAAAACCTTTACAAATAAACATAGTCTTAGAGTTCACATAATACATATGCACAAACACACATCAAAAGTAAAATGTACAGTGTGCGGCGTTTACGTTCGCTTCTTAAGGAGCCACATGCGTAATAAGCATATGGCCGCACCAGAGGCCGCGTACTGTTCCGAGTGCGATATGCGGTTTGCTACCAATGCGTCTTATAGCGCACATCTAAAGTATTCCAAAAAACATCGCTCGGACACTGTACTCAGGCATGTGTGTGAAATATGCGATGCTAAGTTCGTAACTTCAACTGGTTTGAAGAGGCATGTTCTACTGACACACTCTACTGAGCGGCCGCTGAACTGTGACCGCTGTGGAAAGGGTTTCGACAGGCAGTCAAGACTAACTAAACACGTATTACACGTGCACGAGGGAGTCGAGAAACCTAAAGATAACATATGCGATATCTGCGGAAAAGGATTTAACACTAAATTTATGCTGAGTAATCACATCCGGGTACACACGGGCGAGAAGCCATTCCGATGCGACATTTGTTCTGCCGCGTTCAGTCAAAAGAGCGCTCTGACCACACACACGAGAGGAGTCCACCTCAAACTGAAGACAAAACATCCCAGACATACAACATAA
- Protein Sequence
- MTNVDSVCWECINLFHKVYKFKQRVVKAQECLIDTMKLKPLAPLSQLTQSPMKVNDVCCNVTIGKINQDVKLKKYIKVEIESIKSESIDDTNDDNEYKNYEVDISGIKTDVKKACYDTDEDHSDIKNEKYHDEMKDETKDTKTTKLKRKARVKVEKNLKRVKSKDIKKMISKKNYMIIDNMSEEEMLAKREADRQTDRYKNKVKYRCELCILGFFDKNLYEKHMKCKHSEEAGIHQCPICEVRFIKINFFEEHVQSHYQKYKCRICPFIGYKLSDMVSHDAKEHDVRRLVCTVCGEGFLSPSTLRLHREMTHQAPPKCEFCDKTFTNKHSLRVHIIHMHKHTSKVKCTVCGVYVRFLRSHMRNKHMAAPEAAYCSECDMRFATNASYSAHLKYSKKHRSDTVLRHVCEICDAKFVTSTGLKRHVLLTHSTERPLNCDRCGKGFDRQSRLTKHVLHVHEGVEKPKDNICDICGKGFNTKFMLSNHIRVHTGEKPFRCDICSAAFSQKSALTTHTRGVHLKLKTKHPRHTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00737783;
- 90% Identity
- -
- 80% Identity
- -